miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 5507 0.73 0.350895
Target:  5'- cCCGUGCuaCCAGguucgcgcGCCGGCGGAGcucugucacGCGCu -3'
miRNA:   3'- -GGCACG--GGUU--------CGGCCGCCUCua-------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 127024 0.73 0.366361
Target:  5'- gUCGUGgagaCCAuGCUGGCggcgggcgcGGAGGUGCGCa -3'
miRNA:   3'- -GGCACg---GGUuCGGCCG---------CCUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 30037 0.73 0.374268
Target:  5'- aCCGUGCCCuu-CUGGCu--GGUGCGCg -3'
miRNA:   3'- -GGCACGGGuucGGCCGccuCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 61801 0.72 0.38229
Target:  5'- uCCGUGUCC-GGCaucucguaGuaGGAGAUGCGCc -3'
miRNA:   3'- -GGCACGGGuUCGg-------CcgCCUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 12921 0.72 0.38229
Target:  5'- cCCGUGCgCCGAG-UGGCuGGuGcgGCGCg -3'
miRNA:   3'- -GGCACG-GGUUCgGCCG-CCuCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 55168 0.72 0.38229
Target:  5'- uUCGUGCgCGucgacgacguGCCGGUGGGcAUGCGCg -3'
miRNA:   3'- -GGCACGgGUu---------CGGCCGCCUcUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 68489 0.72 0.38229
Target:  5'- aCCGgGCgCCGcgcuGCUGGCGGccguGGGUGCGCc -3'
miRNA:   3'- -GGCaCG-GGUu---CGGCCGCC----UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 88922 0.72 0.385531
Target:  5'- aCCGUGCUgaccgucgucugCGAGCUcgcggaccgcgcggaGGCGGAGG-GCGCg -3'
miRNA:   3'- -GGCACGG------------GUUCGG---------------CCGCCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 117818 0.72 0.390426
Target:  5'- gCGUggcGCCCGGGgacCCgGGCGG-GGUGCGCa -3'
miRNA:   3'- gGCA---CGGGUUC---GG-CCGCCuCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 107163 0.72 0.390426
Target:  5'- gCGUGgCCAAG-CGGCugcuGGAGAUGcCGCu -3'
miRNA:   3'- gGCACgGGUUCgGCCG----CCUCUAC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 47921 0.72 0.398674
Target:  5'- aCCGUGcCCCGGGUCGuuGCGGAGGaggccggccUGaCGCu -3'
miRNA:   3'- -GGCAC-GGGUUCGGC--CGCCUCU---------AC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 67722 0.72 0.398674
Target:  5'- cCCGUcGUCCuccgGGaCCGGCGGcGcgGCGCg -3'
miRNA:   3'- -GGCA-CGGGu---UC-GGCCGCCuCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 58197 0.72 0.407033
Target:  5'- ---gGCCCGcguGGCCGaGCGGAaGAUGgGCg -3'
miRNA:   3'- ggcaCGGGU---UCGGC-CGCCU-CUACgCG- -5'
25699 3' -59.7 NC_005337.1 + 100069 0.72 0.412949
Target:  5'- aCGUGgCCAAGCUGGaCuggagcaaggacugGGAGAaGCGCg -3'
miRNA:   3'- gGCACgGGUUCGGCC-G--------------CCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 48793 0.72 0.424076
Target:  5'- aCGUGCUCAAGCUGGUGGccGUGUuCg -3'
miRNA:   3'- gGCACGGGUUCGGCCGCCucUACGcG- -5'
25699 3' -59.7 NC_005337.1 + 85396 0.72 0.424076
Target:  5'- gCGUGgUCuGGCCgccgGGCGGGGAcGCGCa -3'
miRNA:   3'- gGCACgGGuUCGG----CCGCCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 103002 0.71 0.450421
Target:  5'- aCGUGCCCGAGCgCGGCccgcAGGUGgGg -3'
miRNA:   3'- gGCACGGGUUCG-GCCGcc--UCUACgCg -5'
25699 3' -59.7 NC_005337.1 + 13895 0.71 0.450421
Target:  5'- aCGUGCCgcaCGAGCCGGC--AGgcGCGCc -3'
miRNA:   3'- gGCACGG---GUUCGGCCGccUCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 1418 0.71 0.459401
Target:  5'- gCGUGUUugucugggucugCGAGCgCGGCGGcgccgAGGUGCGCg -3'
miRNA:   3'- gGCACGG------------GUUCG-GCCGCC-----UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 77409 0.71 0.459401
Target:  5'- uUCGUcGCCaugcGCUGGCGGuGcAUGCGCa -3'
miRNA:   3'- -GGCA-CGGguu-CGGCCGCCuC-UACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.