miRNA display CGI


Results 1 - 20 of 195 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 24520 1.13 0.000639
Target:  5'- cCCGUGCCCAAGCCGGCGGAGAUGCGCg -3'
miRNA:   3'- -GGCACGGGUUCGGCCGCCUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 120674 0.79 0.142746
Target:  5'- ---cGCCC-GGCUGGCGGAGAUGgCGCu -3'
miRNA:   3'- ggcaCGGGuUCGGCCGCCUCUAC-GCG- -5'
25699 3' -59.7 NC_005337.1 + 96380 0.77 0.192119
Target:  5'- cCCGgucgcGCCCGAGCaggCGGCGGAGGacgaggugGCGCa -3'
miRNA:   3'- -GGCa----CGGGUUCG---GCCGCCUCUa-------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 81024 0.76 0.221514
Target:  5'- ---aGUCCGGGCguggagaUGGCGGGGAUGCGCa -3'
miRNA:   3'- ggcaCGGGUUCG-------GCCGCCUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 131540 0.76 0.222044
Target:  5'- cCCGUGCCCGcuaCCGGCGGAcGUcgucGCGCu -3'
miRNA:   3'- -GGCACGGGUuc-GGCCGCCUcUA----CGCG- -5'
25699 3' -59.7 NC_005337.1 + 64658 0.76 0.232868
Target:  5'- uCCaUGUCCAcGUCGGCGaAGAUGCGCa -3'
miRNA:   3'- -GGcACGGGUuCGGCCGCcUCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 39593 0.76 0.232868
Target:  5'- uUCGUGCCCGAGCCcuucGGCGGgcGGGaGCGg -3'
miRNA:   3'- -GGCACGGGUUCGG----CCGCC--UCUaCGCg -5'
25699 3' -59.7 NC_005337.1 + 68338 0.76 0.249933
Target:  5'- gCGUGCCCGuGCCGGaGGAcg-GCGCg -3'
miRNA:   3'- gGCACGGGUuCGGCCgCCUcuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 115326 0.75 0.255846
Target:  5'- aCCGUGCUCGcgacgcccggcGGCgGGCGGAucUGCGUg -3'
miRNA:   3'- -GGCACGGGU-----------UCGgCCGCCUcuACGCG- -5'
25699 3' -59.7 NC_005337.1 + 99161 0.75 0.255846
Target:  5'- aCUGggcGUCCGcGCCGcGCGGAcGAUGCGCg -3'
miRNA:   3'- -GGCa--CGGGUuCGGC-CGCCU-CUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 115287 0.75 0.261874
Target:  5'- aCCG-GCCCGAGCUcGCGGAGGaguacacGCGCc -3'
miRNA:   3'- -GGCaCGGGUUCGGcCGCCUCUa------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 52087 0.75 0.268016
Target:  5'- gCCGUGCgCGc-CCGGCGGccgcgugcAGGUGCGCg -3'
miRNA:   3'- -GGCACGgGUucGGCCGCC--------UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 90281 0.75 0.276811
Target:  5'- aCCGUGCUCAcgaacuucuccaugcGGUCGGUGGAGGUaaacagcaGUGCg -3'
miRNA:   3'- -GGCACGGGU---------------UCGGCCGCCUCUA--------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 83910 0.74 0.307326
Target:  5'- cCCGUGCCCGGgcccgucuccGCCGGCgugggguucuuGGAGAaGCGg -3'
miRNA:   3'- -GGCACGGGUU----------CGGCCG-----------CCUCUaCGCg -5'
25699 3' -59.7 NC_005337.1 + 127906 0.74 0.310098
Target:  5'- gCGUGCgggCCGAGCCGGUgcugggcaaguacgcGGAcgcGGUGCGCg -3'
miRNA:   3'- gGCACG---GGUUCGGCCG---------------CCU---CUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 120421 0.74 0.314291
Target:  5'- aCCGU-CCUGAGCCGGCaGGcggcGGAcUGCGCg -3'
miRNA:   3'- -GGCAcGGGUUCGGCCG-CC----UCU-ACGCG- -5'
25699 3' -59.7 NC_005337.1 + 97089 0.73 0.334424
Target:  5'- gCGUGCCCAAccgcaugcuggugccGCaguggcgcucggcggUGGCGGAGcUGCGCg -3'
miRNA:   3'- gGCACGGGUU---------------CG---------------GCCGCCUCuACGCG- -5'
25699 3' -59.7 NC_005337.1 + 10397 0.73 0.335898
Target:  5'- -gGUGCUCGGGCU-GUGGAGGUGCGg -3'
miRNA:   3'- ggCACGGGUUCGGcCGCCUCUACGCg -5'
25699 3' -59.7 NC_005337.1 + 34530 0.73 0.350895
Target:  5'- aUCGcGCCCGccucgcguAGCCGGCGGgAGA-GCGUc -3'
miRNA:   3'- -GGCaCGGGU--------UCGGCCGCC-UCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 5507 0.73 0.350895
Target:  5'- cCCGUGCuaCCAGguucgcgcGCCGGCGGAGcucugucacGCGCu -3'
miRNA:   3'- -GGCACG--GGUU--------CGGCCGCCUCua-------CGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.