miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25699 3' -59.7 NC_005337.1 + 835 0.68 0.622128
Target:  5'- gCGgGCCCGGGCUcgacgaaGGCGGcGGgcaGCGCg -3'
miRNA:   3'- gGCaCGGGUUCGG-------CCGCCuCUa--CGCG- -5'
25699 3' -59.7 NC_005337.1 + 835 0.68 0.622128
Target:  5'- gCGgGCCCGGGCUcgacgaaGGCGGcGGgcaGCGCg -3'
miRNA:   3'- gGCaCGGGUUCGG-------CCGCCuCUa--CGCG- -5'
25699 3' -59.7 NC_005337.1 + 967 0.68 0.643099
Target:  5'- gCGggGCUgGAG-CGGCGGGGcugGCGCg -3'
miRNA:   3'- gGCa-CGGgUUCgGCCGCCUCua-CGCG- -5'
25699 3' -59.7 NC_005337.1 + 967 0.68 0.643099
Target:  5'- gCGggGCUgGAG-CGGCGGGGcugGCGCg -3'
miRNA:   3'- gGCa-CGGgUUCgGCCGCCUCua-CGCG- -5'
25699 3' -59.7 NC_005337.1 + 1138 0.66 0.722996
Target:  5'- gCGcGCgaCCAGcuccgcggggagcgcGCCGGCGGAGcggcccgcuaggcgGUGCGCg -3'
miRNA:   3'- gGCaCG--GGUU---------------CGGCCGCCUC--------------UACGCG- -5'
25699 3' -59.7 NC_005337.1 + 1269 0.67 0.706483
Target:  5'- gCCGcaggaugGCCCGcggaggcgGGUCGGCGGgcagguuguccauccGGcgGCGCa -3'
miRNA:   3'- -GGCa------CGGGU--------UCGGCCGCC---------------UCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 1418 0.71 0.459401
Target:  5'- gCGUGUUugucugggucugCGAGCgCGGCGGcgccgAGGUGCGCg -3'
miRNA:   3'- gGCACGG------------GUUCG-GCCGCC-----UCUACGCG- -5'
25699 3' -59.7 NC_005337.1 + 1979 0.68 0.653078
Target:  5'- gCCGUGCacgCCGGGUCGGCGucAGcUGCGg -3'
miRNA:   3'- -GGCACG---GGUUCGGCCGCc-UCuACGCg -5'
25699 3' -59.7 NC_005337.1 + 2272 0.67 0.67
Target:  5'- cCCGUGUCCGcccgcacugggucaGGCugCGGCGGGGucgggaGCGUc -3'
miRNA:   3'- -GGCACGGGU--------------UCG--GCCGCCUCua----CGCG- -5'
25699 3' -59.7 NC_005337.1 + 2826 0.66 0.750647
Target:  5'- ---aGCCCAGGCCGagcgcggccuccGCGGAGAcggagucCGCg -3'
miRNA:   3'- ggcaCGGGUUCGGC------------CGCCUCUac-----GCG- -5'
25699 3' -59.7 NC_005337.1 + 4084 0.69 0.577376
Target:  5'- uCCGcGCCCAucuucAGCagcguccucaccgcgCGcGCGGAGAcGCGCg -3'
miRNA:   3'- -GGCaCGGGU-----UCG---------------GC-CGCCUCUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 4653 0.66 0.751586
Target:  5'- cCCGgcgGCCaCGAGCCGcCGGAcGAgcuccacggucgcucGCGCg -3'
miRNA:   3'- -GGCa--CGG-GUUCGGCcGCCU-CUa--------------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 5507 0.73 0.350895
Target:  5'- cCCGUGCuaCCAGguucgcgcGCCGGCGGAGcucugucacGCGCu -3'
miRNA:   3'- -GGCACG--GGUU--------CGGCCGCCUCua-------CGCG- -5'
25699 3' -59.7 NC_005337.1 + 5707 0.66 0.730695
Target:  5'- -aGUGCuugaccgCCAGGCCGgaGCGGGGAgccaCGCg -3'
miRNA:   3'- ggCACG-------GGUUCGGC--CGCCUCUac--GCG- -5'
25699 3' -59.7 NC_005337.1 + 5739 0.68 0.640104
Target:  5'- gCCGcGCUCGGGCUcuggcacggcggcgGGCGGcAGccGCGCg -3'
miRNA:   3'- -GGCaCGGGUUCGG--------------CCGCC-UCuaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 6596 0.67 0.672978
Target:  5'- aCCG-GCgCCAGGUCGGCgcccaucuGGAuGAgGCGCc -3'
miRNA:   3'- -GGCaCG-GGUUCGGCCG--------CCU-CUaCGCG- -5'
25699 3' -59.7 NC_005337.1 + 7041 0.68 0.633113
Target:  5'- gCCGagcacGUCgGGGCgggCGGCGGGGuUGCGCg -3'
miRNA:   3'- -GGCa----CGGgUUCG---GCCGCCUCuACGCG- -5'
25699 3' -59.7 NC_005337.1 + 7785 0.69 0.593232
Target:  5'- uUGcGCUCAAuGCCGGCGGGGGaauUGCa- -3'
miRNA:   3'- gGCaCGGGUU-CGGCCGCCUCU---ACGcg -5'
25699 3' -59.7 NC_005337.1 + 9514 0.68 0.623126
Target:  5'- gCCGU-CaCCAugcGGCCGGgGGAGGcugGUGCu -3'
miRNA:   3'- -GGCAcG-GGU---UCGGCCgCCUCUa--CGCG- -5'
25699 3' -59.7 NC_005337.1 + 10397 0.73 0.335898
Target:  5'- -gGUGCUCGGGCU-GUGGAGGUGCGg -3'
miRNA:   3'- ggCACGGGUUCGGcCGCCUCUACGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.