miRNA display CGI


Results 1 - 20 of 347 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25716 5' -59.9 NC_005337.1 + 42648 0.66 0.767536
Target:  5'- cCCGCACAUCcUCGGGCcgcccgagaucggcuUCCGCGcccGGa -3'
miRNA:   3'- cGGCGUGUGGuGGCUCG---------------AGGCGCu--CC- -5'
25716 5' -59.9 NC_005337.1 + 9369 0.66 0.763864
Target:  5'- -gCGCGCugCGCguuCGAGCcagaCgGCGAGGu -3'
miRNA:   3'- cgGCGUGugGUG---GCUCGa---GgCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 128449 0.66 0.763864
Target:  5'- nGCCGCacuucACACCGCCGGacCggCGCGGGa -3'
miRNA:   3'- -CGGCG-----UGUGGUGGCUc-GagGCGCUCc -5'
25716 5' -59.9 NC_005337.1 + 3082 0.66 0.763864
Target:  5'- uCCGCGCACCucggcgacgGCC-AGCgacUCCGCGAc- -3'
miRNA:   3'- cGGCGUGUGG---------UGGcUCG---AGGCGCUcc -5'
25716 5' -59.9 NC_005337.1 + 133654 0.66 0.763864
Target:  5'- cGCCGCGCuggaCGCCGAcgcggaguucGC-CUGCGuGGc -3'
miRNA:   3'- -CGGCGUGug--GUGGCU----------CGaGGCGCuCC- -5'
25716 5' -59.9 NC_005337.1 + 41393 0.66 0.763864
Target:  5'- aCCGCGCGCgGgcagaugacguCCG-GCgUCCGCGGGa -3'
miRNA:   3'- cGGCGUGUGgU-----------GGCuCG-AGGCGCUCc -5'
25716 5' -59.9 NC_005337.1 + 102045 0.66 0.763864
Target:  5'- cGCCugcuucccggaGCACGCCuCCGAcCUCUuCGAGGc -3'
miRNA:   3'- -CGG-----------CGUGUGGuGGCUcGAGGcGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 124797 0.66 0.763864
Target:  5'- cGCCGCGCuggagugggGCCGCagCGAggagguGCUCCGCacgggcaucGAGGc -3'
miRNA:   3'- -CGGCGUG---------UGGUG--GCU------CGAGGCG---------CUCC- -5'
25716 5' -59.9 NC_005337.1 + 23061 0.66 0.763864
Target:  5'- cGCCGCGCGCCGgaaCGcGGCggCCGUGcccGGc -3'
miRNA:   3'- -CGGCGUGUGGUg--GC-UCGa-GGCGCu--CC- -5'
25716 5' -59.9 NC_005337.1 + 41799 0.66 0.763864
Target:  5'- aGuuGCGCGCCGUCGAGgCgUUCGCcAGGa -3'
miRNA:   3'- -CggCGUGUGGUGGCUC-G-AGGCGcUCC- -5'
25716 5' -59.9 NC_005337.1 + 133654 0.66 0.763864
Target:  5'- cGCCGCGCuggaCGCCGAcgcggaguucGC-CUGCGuGGc -3'
miRNA:   3'- -CGGCGUGug--GUGGCU----------CGaGGCGCuCC- -5'
25716 5' -59.9 NC_005337.1 + 68543 0.66 0.762943
Target:  5'- uGCCGCGCuagugacGgCGCCGGGCgcgccccaCCGCGugcGGc -3'
miRNA:   3'- -CGGCGUG-------UgGUGGCUCGa-------GGCGCu--CC- -5'
25716 5' -59.9 NC_005337.1 + 87796 0.66 0.754607
Target:  5'- gGCCGCgcgggccacccACACCACCagGAGUcgcacgcgUCCGCGuacgcguuguacAGGa -3'
miRNA:   3'- -CGGCG-----------UGUGGUGG--CUCG--------AGGCGC------------UCC- -5'
25716 5' -59.9 NC_005337.1 + 76766 0.66 0.754607
Target:  5'- -aCGCGCGCCACgaaGAGCugguagUCCuuGAGGc -3'
miRNA:   3'- cgGCGUGUGGUGg--CUCG------AGGcgCUCC- -5'
25716 5' -59.9 NC_005337.1 + 84564 0.66 0.754607
Target:  5'- -aCGCGCGgCAgCGcGUgaCCGCGAGGg -3'
miRNA:   3'- cgGCGUGUgGUgGCuCGa-GGCGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 122865 0.66 0.754607
Target:  5'- cCCGCGCGCCugCG-GaaCC-CGGGGc -3'
miRNA:   3'- cGGCGUGUGGugGCuCgaGGcGCUCC- -5'
25716 5' -59.9 NC_005337.1 + 105072 0.66 0.754607
Target:  5'- cGCUGCGCAgCGCCuccuucggcacGGGCgccgCCGCGucuccGGa -3'
miRNA:   3'- -CGGCGUGUgGUGG-----------CUCGa---GGCGCu----CC- -5'
25716 5' -59.9 NC_005337.1 + 5521 0.66 0.754607
Target:  5'- uUCGCGCGCCgGCgGAGCUCUGUc--- -3'
miRNA:   3'- cGGCGUGUGG-UGgCUCGAGGCGcucc -5'
25716 5' -59.9 NC_005337.1 + 67462 0.66 0.754607
Target:  5'- uCCgGCGCAgCCGCC--GCUUCGuCGAGGg -3'
miRNA:   3'- cGG-CGUGU-GGUGGcuCGAGGC-GCUCC- -5'
25716 5' -59.9 NC_005337.1 + 129693 0.66 0.754607
Target:  5'- aGCaCGCGCAgUCGCCGcGC-CCGCGGc- -3'
miRNA:   3'- -CG-GCGUGU-GGUGGCuCGaGGCGCUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.