miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25733 3' -55.1 NC_005337.1 + 59681 0.66 0.931645
Target:  5'- aGCACGacccgGGAGAGcccGAGCCGcuUUUCGAg -3'
miRNA:   3'- -CGUGCga---CCUCUC---CUUGGC--AAGGCUg -5'
25733 3' -55.1 NC_005337.1 + 88564 0.66 0.931645
Target:  5'- cCACGCUGGc---GGGCCGggggUUCCGGCu -3'
miRNA:   3'- cGUGCGACCucucCUUGGC----AAGGCUG- -5'
25733 3' -55.1 NC_005337.1 + 103526 0.66 0.931645
Target:  5'- cGCACGCUGccgcccGAGGAGCgCGcgCUGuACg -3'
miRNA:   3'- -CGUGCGACcu----CUCCUUG-GCaaGGC-UG- -5'
25733 3' -55.1 NC_005337.1 + 38616 0.66 0.931129
Target:  5'- gGCGUGCUGGGGAacccggagccccuGGAGCCcGUgcccCUGGCa -3'
miRNA:   3'- -CGUGCGACCUCU-------------CCUUGG-CAa---GGCUG- -5'
25733 3' -55.1 NC_005337.1 + 23064 0.66 0.926374
Target:  5'- cGCGCGCcGGAacGcGGcGGCCGUgcCCGGCa -3'
miRNA:   3'- -CGUGCGaCCU--CuCC-UUGGCAa-GGCUG- -5'
25733 3' -55.1 NC_005337.1 + 11849 0.66 0.926374
Target:  5'- -gAUGUUGGAGAuGGAGCCGc-CCGugaGCg -3'
miRNA:   3'- cgUGCGACCUCU-CCUUGGCaaGGC---UG- -5'
25733 3' -55.1 NC_005337.1 + 75609 0.66 0.924198
Target:  5'- uGUAC-CUGGGGAGcgccgaggacgcgcGGGCCGUcgugaugggcgcgUCCGGCg -3'
miRNA:   3'- -CGUGcGACCUCUC--------------CUUGGCA-------------AGGCUG- -5'
25733 3' -55.1 NC_005337.1 + 108599 0.66 0.92086
Target:  5'- --uCGCUGGAG-GGAGCa---CCGGCg -3'
miRNA:   3'- cguGCGACCUCuCCUUGgcaaGGCUG- -5'
25733 3' -55.1 NC_005337.1 + 106560 0.66 0.92086
Target:  5'- aGCGCGCUGcGGGAG--AUCGUgcagCCGGu -3'
miRNA:   3'- -CGUGCGAC-CUCUCcuUGGCAa---GGCUg -5'
25733 3' -55.1 NC_005337.1 + 104136 0.66 0.909104
Target:  5'- cGCGCGCgUGGAGcgcgugcaGGcGGACCucaCCGACa -3'
miRNA:   3'- -CGUGCG-ACCUC--------UC-CUUGGcaaGGCUG- -5'
25733 3' -55.1 NC_005337.1 + 8261 0.66 0.909104
Target:  5'- cGCACGCgcgGGGGuuGAACgCGgcCgCGACg -3'
miRNA:   3'- -CGUGCGa--CCUCucCUUG-GCaaG-GCUG- -5'
25733 3' -55.1 NC_005337.1 + 38518 0.66 0.909104
Target:  5'- gGCGCGcCUGGuGcAGGGcccGCCGUg-CGACu -3'
miRNA:   3'- -CGUGC-GACCuC-UCCU---UGGCAagGCUG- -5'
25733 3' -55.1 NC_005337.1 + 109228 0.66 0.909104
Target:  5'- cGUACGuCUGcGAgGAGGGcCCGUggCGACg -3'
miRNA:   3'- -CGUGC-GAC-CU-CUCCUuGGCAagGCUG- -5'
25733 3' -55.1 NC_005337.1 + 82575 0.66 0.909104
Target:  5'- gGCGCGCUGGAucuccauggaGAcGGuguCCGUcacgcCCGGCa -3'
miRNA:   3'- -CGUGCGACCU----------CU-CCuu-GGCAa----GGCUG- -5'
25733 3' -55.1 NC_005337.1 + 60226 0.66 0.909104
Target:  5'- gGCGCgggggcugggGCUGGGGucGGAGCCGgagUCgGAg -3'
miRNA:   3'- -CGUG----------CGACCUCu-CCUUGGCa--AGgCUg -5'
25733 3' -55.1 NC_005337.1 + 54034 0.66 0.902864
Target:  5'- uGC-CGCUGGAGAuGuacGCCGaccCCGACc -3'
miRNA:   3'- -CGuGCGACCUCUcCu--UGGCaa-GGCUG- -5'
25733 3' -55.1 NC_005337.1 + 99291 0.66 0.902864
Target:  5'- aCAUcCUGGAG-GGAACCcgcGUUCCGcACu -3'
miRNA:   3'- cGUGcGACCUCuCCUUGG---CAAGGC-UG- -5'
25733 3' -55.1 NC_005337.1 + 52533 0.67 0.896387
Target:  5'- gGCAUGCUGGAcGGGAGCgucauCGUguacaUCGGCu -3'
miRNA:   3'- -CGUGCGACCUcUCCUUG-----GCAa----GGCUG- -5'
25733 3' -55.1 NC_005337.1 + 24350 0.67 0.896387
Target:  5'- cCGCGCUGGAGAGcauGCCcacgCGACa -3'
miRNA:   3'- cGUGCGACCUCUCcu-UGGcaagGCUG- -5'
25733 3' -55.1 NC_005337.1 + 2234 0.67 0.889676
Target:  5'- cCGCGCcguagaggaccuUGGAGAGGAacucgcggaagGCCGUgUCCGuCc -3'
miRNA:   3'- cGUGCG------------ACCUCUCCU-----------UGGCA-AGGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.