miRNA display CGI


Results 1 - 20 of 581 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25792 3' -62.8 NC_005337.1 + 125536 0.66 0.628697
Target:  5'- uCGCCGUuccaccgagcccccgUGCGCGuGUGCagaaGCGUGCugGc -3'
miRNA:   3'- -GCGGCA---------------GCGCGC-CGUGg---UGCGCGugC- -5'
25792 3' -62.8 NC_005337.1 + 59015 0.66 0.628697
Target:  5'- uCGCUGgagugggugCGCGCGGCcuucaccgacuucgcGCCGCugGCGgACGa -3'
miRNA:   3'- -GCGGCa--------GCGCGCCG---------------UGGUG--CGCgUGC- -5'
25792 3' -62.8 NC_005337.1 + 29118 0.66 0.624791
Target:  5'- aCGCCGUgcaGCGCcagcaGCACCAUGUcgGCgACGg -3'
miRNA:   3'- -GCGGCAg--CGCGc----CGUGGUGCG--CG-UGC- -5'
25792 3' -62.8 NC_005337.1 + 44480 0.66 0.624791
Target:  5'- gGCCaGUUcgagGCGCGGCcgcgucACCgACGCGCAa- -3'
miRNA:   3'- gCGG-CAG----CGCGCCG------UGG-UGCGCGUgc -5'
25792 3' -62.8 NC_005337.1 + 76008 0.66 0.624791
Target:  5'- cCGCCGUgCGC-CGGUacacgcggaagACCGcCGCGC-CGg -3'
miRNA:   3'- -GCGGCA-GCGcGCCG-----------UGGU-GCGCGuGC- -5'
25792 3' -62.8 NC_005337.1 + 122102 0.66 0.624791
Target:  5'- aGCuCGUCGCGCacGGCGCggacaucaACGCGaugaACGu -3'
miRNA:   3'- gCG-GCAGCGCG--CCGUGg-------UGCGCg---UGC- -5'
25792 3' -62.8 NC_005337.1 + 100743 0.66 0.624791
Target:  5'- aCGUCGgcgaCGaCGCGuGCAgCCG-GCGCACGg -3'
miRNA:   3'- -GCGGCa---GC-GCGC-CGU-GGUgCGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 69708 0.66 0.624791
Target:  5'- aGaCUGUCG-GUGGCgGCCACGCGguCc -3'
miRNA:   3'- gC-GGCAGCgCGCCG-UGGUGCGCguGc -5'
25792 3' -62.8 NC_005337.1 + 4686 0.66 0.624791
Target:  5'- gGUCGcUCGCGCGG-ACUugaGCaGCACGg -3'
miRNA:   3'- gCGGC-AGCGCGCCgUGGug-CG-CGUGC- -5'
25792 3' -62.8 NC_005337.1 + 120441 0.66 0.623814
Target:  5'- aCGCCccccgaGUCccuGCGgGGCGCgcucgagCGCGCGCugGa -3'
miRNA:   3'- -GCGG------CAG---CGCgCCGUG-------GUGCGCGugC- -5'
25792 3' -62.8 NC_005337.1 + 38971 0.66 0.623814
Target:  5'- gCGCCcgagUGCGCGuGCgucaccgGCCGgGCGCugGg -3'
miRNA:   3'- -GCGGca--GCGCGC-CG-------UGGUgCGCGugC- -5'
25792 3' -62.8 NC_005337.1 + 86616 0.66 0.621861
Target:  5'- gCGCCcUCGCaGCaGuGCACCACGUaguacccggcggugGCGCGc -3'
miRNA:   3'- -GCGGcAGCG-CG-C-CGUGGUGCG--------------CGUGC- -5'
25792 3' -62.8 NC_005337.1 + 71968 0.66 0.621861
Target:  5'- gGUCaUCGCGCuGCuguucgccauggugGCCuCGCGCACGa -3'
miRNA:   3'- gCGGcAGCGCGcCG--------------UGGuGCGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 52468 0.66 0.618933
Target:  5'- gCGCUGagC-CGCGGCGCCcgcgagagccggcucAUGCGCGCc -3'
miRNA:   3'- -GCGGCa-GcGCGCCGUGG---------------UGCGCGUGc -5'
25792 3' -62.8 NC_005337.1 + 5480 0.66 0.617957
Target:  5'- aGCCGcacccgcccaugaUCGCGC-GCACCcgugcuaccagguucGCGCGCcgGCGg -3'
miRNA:   3'- gCGGC-------------AGCGCGcCGUGG---------------UGCGCG--UGC- -5'
25792 3' -62.8 NC_005337.1 + 77788 0.66 0.615029
Target:  5'- aGuuGgggagCGCGUacGGCAgCACGCGCcCGu -3'
miRNA:   3'- gCggCa----GCGCG--CCGUgGUGCGCGuGC- -5'
25792 3' -62.8 NC_005337.1 + 1668 0.66 0.615029
Target:  5'- gGCgCGUCGCGaaccugaaccGCAgCCGCaGCGCGCGu -3'
miRNA:   3'- gCG-GCAGCGCgc--------CGU-GGUG-CGCGUGC- -5'
25792 3' -62.8 NC_005337.1 + 112399 0.66 0.615029
Target:  5'- gCGCCGcgcaggcCGUGCGGUagGCCuggauCGCGgACGa -3'
miRNA:   3'- -GCGGCa------GCGCGCCG--UGGu----GCGCgUGC- -5'
25792 3' -62.8 NC_005337.1 + 109294 0.66 0.615029
Target:  5'- gCGCgCGUUGCaGCcgaagaagcGCACCACGCaCGCGg -3'
miRNA:   3'- -GCG-GCAGCG-CGc--------CGUGGUGCGcGUGC- -5'
25792 3' -62.8 NC_005337.1 + 23126 0.66 0.615029
Target:  5'- cCGCCGUgGuCGCGGC--CAUGCGCc-- -3'
miRNA:   3'- -GCGGCAgC-GCGCCGugGUGCGCGugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.