miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25794 3' -55.5 NC_005337.1 + 132952 0.65 0.922265
Target:  5'- cGCCGCGGCCUCgugcacgugcaccUgGUGGuCGuGAC-Cg -3'
miRNA:   3'- -CGGUGCCGGAGa------------AgCAUCuGC-CUGaG- -5'
25794 3' -55.5 NC_005337.1 + 32196 0.66 0.918886
Target:  5'- gGCCACcgagauguugcaGGCCUCgaagaggUCGgAGGCGuGCUCc -3'
miRNA:   3'- -CGGUG------------CCGGAGa------AGCaUCUGCcUGAG- -5'
25794 3' -55.5 NC_005337.1 + 21814 0.66 0.918886
Target:  5'- cGCCGCaG-CUCUUCGUGcGCGcGCUCu -3'
miRNA:   3'- -CGGUGcCgGAGAAGCAUcUGCcUGAG- -5'
25794 3' -55.5 NC_005337.1 + 66027 0.66 0.918886
Target:  5'- gGCCAUGcacguCCUCUUCGUGGA-GGAg-- -3'
miRNA:   3'- -CGGUGCc----GGAGAAGCAUCUgCCUgag -5'
25794 3' -55.5 NC_005337.1 + 25043 0.66 0.918886
Target:  5'- cGCCACGGgcCCUCcUCGcAGACGuACg- -3'
miRNA:   3'- -CGGUGCC--GGAGaAGCaUCUGCcUGag -5'
25794 3' -55.5 NC_005337.1 + 118598 0.66 0.913061
Target:  5'- uUCAaGGCCUCcgUCGUGGACuGGAggaUCg -3'
miRNA:   3'- cGGUgCCGGAGa-AGCAUCUG-CCUg--AG- -5'
25794 3' -55.5 NC_005337.1 + 35223 0.66 0.913061
Target:  5'- uGCgACGGCgUgagCGU-GACGGAUUCg -3'
miRNA:   3'- -CGgUGCCGgAgaaGCAuCUGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 58029 0.66 0.906997
Target:  5'- gGCCA-GGCCgcgcUCUUCGacGGCGGcguGCUCg -3'
miRNA:   3'- -CGGUgCCGG----AGAAGCauCUGCC---UGAG- -5'
25794 3' -55.5 NC_005337.1 + 95697 0.66 0.906997
Target:  5'- cGCCAC-GCCUCcuuggCGUGcACGGAgUCc -3'
miRNA:   3'- -CGGUGcCGGAGaa---GCAUcUGCCUgAG- -5'
25794 3' -55.5 NC_005337.1 + 18732 0.66 0.904504
Target:  5'- cGCgCugGcGCCUCUgaccggaacaugcCGUAcacGAUGGACUCg -3'
miRNA:   3'- -CG-GugC-CGGAGAa------------GCAU---CUGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 16659 0.66 0.900694
Target:  5'- cGCgGCGGCCgg-UCG-AGACGaGGgUCg -3'
miRNA:   3'- -CGgUGCCGGagaAGCaUCUGC-CUgAG- -5'
25794 3' -55.5 NC_005337.1 + 117086 0.66 0.900694
Target:  5'- aGCuCAUGGCCgcgCUgaagauguucUCGcAGACGGAC-Cg -3'
miRNA:   3'- -CG-GUGCCGGa--GA----------AGCaUCUGCCUGaG- -5'
25794 3' -55.5 NC_005337.1 + 114122 0.66 0.900694
Target:  5'- cGCCGCGGCCUgCggcagCGUGGAgCGcGcCUUc -3'
miRNA:   3'- -CGGUGCCGGA-Gaa---GCAUCU-GC-CuGAG- -5'
25794 3' -55.5 NC_005337.1 + 71085 0.66 0.900694
Target:  5'- cGCUugGGCUgCUUgaccggagCGggcGGCGGGCUCa -3'
miRNA:   3'- -CGGugCCGGaGAA--------GCau-CUGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 96135 0.66 0.896142
Target:  5'- uGCCGCGGCCggugagccggaacgCGUAGAUGG-Cg- -3'
miRNA:   3'- -CGGUGCCGGagaa----------GCAUCUGCCuGag -5'
25794 3' -55.5 NC_005337.1 + 75205 0.66 0.894156
Target:  5'- uCCACGGuCUUCUgcCGgcccAGGuCGGACUCg -3'
miRNA:   3'- cGGUGCC-GGAGAa-GCa---UCU-GCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 48131 0.66 0.894156
Target:  5'- cGCCACgcuggagauGGCCUCguaCGUGGACGaGCc- -3'
miRNA:   3'- -CGGUG---------CCGGAGaa-GCAUCUGCcUGag -5'
25794 3' -55.5 NC_005337.1 + 43903 0.67 0.887386
Target:  5'- aCCACGGCCaUCUcaGU-GcCGGGCUCc -3'
miRNA:   3'- cGGUGCCGG-AGAagCAuCuGCCUGAG- -5'
25794 3' -55.5 NC_005337.1 + 130642 0.67 0.883214
Target:  5'- gGCCGCGGCgCUggacgcacaggugccCUgcgaccgcgaGUGGGCGGACUg -3'
miRNA:   3'- -CGGUGCCG-GA---------------GAag--------CAUCUGCCUGAg -5'
25794 3' -55.5 NC_005337.1 + 37645 0.67 0.873166
Target:  5'- cGCCGCGGUCgggCUUCaccgcGAUGGGCa- -3'
miRNA:   3'- -CGGUGCCGGa--GAAGcau--CUGCCUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.