miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25941 3' -50.4 NC_005337.1 + 18429 0.66 0.994156
Target:  5'- cGAGA-GCCGCUccGCcUUgagcACGGGCGg -3'
miRNA:   3'- -CUUUgCGGCGAuuUGaAGa---UGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 116412 0.66 0.994156
Target:  5'- aGAGcCGCCGCc--GCUUCUucaagaagcucgGCGGGUc -3'
miRNA:   3'- -CUUuGCGGCGauuUGAAGA------------UGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 127625 0.66 0.994156
Target:  5'- --cACGCCGCUGGAuCUUCUGCu---- -3'
miRNA:   3'- cuuUGCGGCGAUUU-GAAGAUGcccgc -5'
25941 3' -50.4 NC_005337.1 + 89050 0.66 0.994156
Target:  5'- --cGCGCUGCUGAccACcaugacGCGGGCGc -3'
miRNA:   3'- cuuUGCGGCGAUU--UGaaga--UGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 130675 0.66 0.994156
Target:  5'- --uACGgCGCUAcGCcgCUGgGGGCGc -3'
miRNA:   3'- cuuUGCgGCGAUuUGaaGAUgCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 87132 0.66 0.994156
Target:  5'- -uGACGCUGUUGAACaucacgCUGauGGCGa -3'
miRNA:   3'- cuUUGCGGCGAUUUGaa----GAUgcCCGC- -5'
25941 3' -50.4 NC_005337.1 + 16894 0.66 0.994156
Target:  5'- gGGGACGCCGagguccagGAuCUUCUggaccagcACGGGCu -3'
miRNA:   3'- -CUUUGCGGCga------UUuGAAGA--------UGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 68637 0.66 0.993224
Target:  5'- -cAGCGUgGCggagGGGCggaUCUugGGGUGg -3'
miRNA:   3'- cuUUGCGgCGa---UUUGa--AGAugCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 5736 0.66 0.993224
Target:  5'- --uAUGCCGCgcucGGGC-UCUggcacggcgGCGGGCGg -3'
miRNA:   3'- cuuUGCGGCGa---UUUGaAGA---------UGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 80616 0.66 0.993224
Target:  5'- cGAGcACGCCGCgAAGCgc--GCGuGGCGg -3'
miRNA:   3'- -CUU-UGCGGCGaUUUGaagaUGC-CCGC- -5'
25941 3' -50.4 NC_005337.1 + 5967 0.66 0.993224
Target:  5'- --cGCGCCGCgcgcGAGCag--ACGGGCc -3'
miRNA:   3'- cuuUGCGGCGa---UUUGaagaUGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 44649 0.66 0.993224
Target:  5'- --uGCGCCGC--AGCgggcgCUACguGGGCGa -3'
miRNA:   3'- cuuUGCGGCGauUUGaa---GAUG--CCCGC- -5'
25941 3' -50.4 NC_005337.1 + 48563 0.66 0.993224
Target:  5'- ----aGCCGUguuccggGAGCUUCUGCuGGCc -3'
miRNA:   3'- cuuugCGGCGa------UUUGAAGAUGcCCGc -5'
25941 3' -50.4 NC_005337.1 + 75617 0.66 0.993224
Target:  5'- gGGAGCGCCGa-GGACgc--GCGGGCc -3'
miRNA:   3'- -CUUUGCGGCgaUUUGaagaUGCCCGc -5'
25941 3' -50.4 NC_005337.1 + 11638 0.66 0.993224
Target:  5'- aGAAGC-CCag-GAACUUCU-CGGGCGc -3'
miRNA:   3'- -CUUUGcGGcgaUUUGAAGAuGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 47766 0.66 0.993024
Target:  5'- ---cCGCCGCgccaacgcguACUUCga-GGGCGg -3'
miRNA:   3'- cuuuGCGGCGauu-------UGAAGaugCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 105069 0.66 0.992819
Target:  5'- -cGGCGCUGCgcagcgccucCUUCggcACGGGCGc -3'
miRNA:   3'- cuUUGCGGCGauuu------GAAGa--UGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 97614 0.66 0.992177
Target:  5'- cGGugGCCGCggc-CUUCgcggACGGGaCGu -3'
miRNA:   3'- cUUugCGGCGauuuGAAGa---UGCCC-GC- -5'
25941 3' -50.4 NC_005337.1 + 97964 0.66 0.992177
Target:  5'- gGAGGCGagcCUGCUGGuGCUguUCUuCGGGCGa -3'
miRNA:   3'- -CUUUGC---GGCGAUU-UGA--AGAuGCCCGC- -5'
25941 3' -50.4 NC_005337.1 + 1018 0.66 0.991489
Target:  5'- uGGAgGCCGUcGAAUUUCacuuugcgcgggagGCGGGCGg -3'
miRNA:   3'- cUUUgCGGCGaUUUGAAGa-------------UGCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.