miRNA display CGI


Results 1 - 20 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 128045 0.66 0.909192
Target:  5'- gGCCGUGCACGUGCccaa---CGCCCUc -3'
miRNA:   3'- -CGGUGCGUGCGCGucuauuaGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 127810 0.66 0.909192
Target:  5'- cGCCgGCGCugacgucaACGUGCGGAgcGUCGUCg- -3'
miRNA:   3'- -CGG-UGCG--------UGCGCGUCUauUAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 105311 0.66 0.909192
Target:  5'- cGCUGCGCACGCcCc---AGUUGCCCa -3'
miRNA:   3'- -CGGUGCGUGCGcGucuaUUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 33405 0.66 0.909192
Target:  5'- uCCAUGCGCGUcaucgGCAcGGUGAgcgCGUCCa -3'
miRNA:   3'- cGGUGCGUGCG-----CGU-CUAUUa--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 8728 0.66 0.909192
Target:  5'- cCCACGucguccUugGCGCGGAUGucggCGCCg- -3'
miRNA:   3'- cGGUGC------GugCGCGUCUAUua--GCGGga -5'
25960 3' -55.5 NC_005337.1 + 130758 0.66 0.909192
Target:  5'- gGCCuCGCAgguggacuuCGCGCAGAccUGggCGCCg- -3'
miRNA:   3'- -CGGuGCGU---------GCGCGUCU--AUuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 69957 0.66 0.909192
Target:  5'- aGCgGCGCaugaACGCGUAGAcgcggCGCUCg -3'
miRNA:   3'- -CGgUGCG----UGCGCGUCUauua-GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 130532 0.66 0.909192
Target:  5'- uCCugGUGCGCGCGGg----CGCCa- -3'
miRNA:   3'- cGGugCGUGCGCGUCuauuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 42398 0.66 0.909192
Target:  5'- cGCCGCG-GCGCGCGGcc--UCGCUg- -3'
miRNA:   3'- -CGGUGCgUGCGCGUCuauuAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 74934 0.66 0.909192
Target:  5'- cGCgCGCGCGgcCGCGCGGAUGcggUGCUg- -3'
miRNA:   3'- -CG-GUGCGU--GCGCGUCUAUua-GCGGga -5'
25960 3' -55.5 NC_005337.1 + 5570 0.66 0.909192
Target:  5'- -aCACGCGCGC-CAGccgcGUCGCCa- -3'
miRNA:   3'- cgGUGCGUGCGcGUCuau-UAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 95386 0.66 0.908577
Target:  5'- gGCCGCGCgACGCGCgcgaacuccgagcAGAaccgcgCGUCCa -3'
miRNA:   3'- -CGGUGCG-UGCGCG-------------UCUauua--GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 117319 0.66 0.908577
Target:  5'- uCCGCGCACGCGUucGGGUucuccagggccguGGUCuuccucgacgaGCCCg -3'
miRNA:   3'- cGGUGCGUGCGCG--UCUA-------------UUAG-----------CGGGa -5'
25960 3' -55.5 NC_005337.1 + 51701 0.66 0.90293
Target:  5'- aGUCugGCcugcgacggcgACGCGCuGAUGAUCGagcugCCUg -3'
miRNA:   3'- -CGGugCG-----------UGCGCGuCUAUUAGCg----GGA- -5'
25960 3' -55.5 NC_005337.1 + 48584 0.66 0.90293
Target:  5'- -gCugGC-CGUGCAGAcGAUCGuguCCCUg -3'
miRNA:   3'- cgGugCGuGCGCGUCUaUUAGC---GGGA- -5'
25960 3' -55.5 NC_005337.1 + 65613 0.66 0.90293
Target:  5'- cGCUGCuGCACGCGCucaaccaccccaAGAUc--CGCCCc -3'
miRNA:   3'- -CGGUG-CGUGCGCG------------UCUAuuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 66131 0.66 0.90293
Target:  5'- cGCCGCccgcuagggGCGCGCGCGGccaccgGCCCc -3'
miRNA:   3'- -CGGUG---------CGUGCGCGUCuauuagCGGGa -5'
25960 3' -55.5 NC_005337.1 + 115137 0.66 0.90293
Target:  5'- uGCaCACGaCGCGCGUGGcgGAggccugCGUCCg -3'
miRNA:   3'- -CG-GUGC-GUGCGCGUCuaUUa-----GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 102458 0.66 0.90293
Target:  5'- gGCCGaGCACGCcaaGCAGA-AGUC-CCCg -3'
miRNA:   3'- -CGGUgCGUGCG---CGUCUaUUAGcGGGa -5'
25960 3' -55.5 NC_005337.1 + 72470 0.66 0.90293
Target:  5'- cGCCAUGCGCGUggacGUGGAcuacuUCGCCa- -3'
miRNA:   3'- -CGGUGCGUGCG----CGUCUauu--AGCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.