miRNA display CGI


Results 1 - 20 of 330 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25960 3' -55.5 NC_005337.1 + 68170 0.78 0.308537
Target:  5'- uCCACGCGCGCGCAGAcgccgcacagCGCCUc -3'
miRNA:   3'- cGGUGCGUGCGCGUCUauua------GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 133458 0.74 0.487706
Target:  5'- gGCC-CGCGCGCGCGGAcggcuccgcggagcUGGUCuGCCUc -3'
miRNA:   3'- -CGGuGCGUGCGCGUCU--------------AUUAG-CGGGa -5'
25960 3' -55.5 NC_005337.1 + 120518 0.74 0.490608
Target:  5'- cGCCGCGUucggGCGCGCGGAgaucaCGCUCa -3'
miRNA:   3'- -CGGUGCG----UGCGCGUCUauua-GCGGGa -5'
25960 3' -55.5 NC_005337.1 + 8728 0.66 0.909192
Target:  5'- cCCACGucguccUugGCGCGGAUGucggCGCCg- -3'
miRNA:   3'- cGGUGC------GugCGCGUCUAUua--GCGGga -5'
25960 3' -55.5 NC_005337.1 + 46661 0.76 0.365262
Target:  5'- gGCUGCGCGCgaucGCGCAGc-AGUCGCCCg -3'
miRNA:   3'- -CGGUGCGUG----CGCGUCuaUUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 39142 0.76 0.373459
Target:  5'- aGCCugGUgaugcagaacucGCGCGCGGAcaUGAUCGCCg- -3'
miRNA:   3'- -CGGugCG------------UGCGCGUCU--AUUAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 116608 0.75 0.407474
Target:  5'- cGCCGCGgugcgGCGCGUGGAcguGUCGCCCg -3'
miRNA:   3'- -CGGUGCg----UGCGCGUCUau-UAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 81556 0.75 0.416276
Target:  5'- cGgCGCGCAgcuCGCGCAGGUAGgccUCGUCCg -3'
miRNA:   3'- -CgGUGCGU---GCGCGUCUAUU---AGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 65879 0.75 0.434223
Target:  5'- aCCACGCacGCGCGCAGGgcggacGUCGCaCCg -3'
miRNA:   3'- cGGUGCG--UGCGCGUCUau----UAGCG-GGa -5'
25960 3' -55.5 NC_005337.1 + 82260 0.74 0.480965
Target:  5'- aCCGCGCGCGCGCGGc----CGUCCg -3'
miRNA:   3'- cGGUGCGUGCGCGUCuauuaGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 132715 0.74 0.452611
Target:  5'- gGCCGCGCcauGCGCGCGGuaucaagcGGUCGCCg- -3'
miRNA:   3'- -CGGUGCG---UGCGCGUCua------UUAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 99475 0.75 0.422506
Target:  5'- gGCCAccCGCgACGCGCAGAUGgcgaccaugauccuGUCGCCg- -3'
miRNA:   3'- -CGGU--GCG-UGCGCGUCUAU--------------UAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 86671 0.78 0.311424
Target:  5'- cGCgGcCGCGCGCGCGGc--GUCGCCCa -3'
miRNA:   3'- -CGgU-GCGUGCGCGUCuauUAGCGGGa -5'
25960 3' -55.5 NC_005337.1 + 86517 0.74 0.461963
Target:  5'- -aCGCGUugGCGCGGcgGG-CGCCCUu -3'
miRNA:   3'- cgGUGCGugCGCGUCuaUUaGCGGGA- -5'
25960 3' -55.5 NC_005337.1 + 3537 0.77 0.333733
Target:  5'- gGCCACGUA-GCGCAGGUAgaucucGUCGCCg- -3'
miRNA:   3'- -CGGUGCGUgCGCGUCUAU------UAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 37405 0.75 0.416276
Target:  5'- cGCCGCGCAucCGCGCGGA--GUCGCg-- -3'
miRNA:   3'- -CGGUGCGU--GCGCGUCUauUAGCGgga -5'
25960 3' -55.5 NC_005337.1 + 90079 0.74 0.480965
Target:  5'- gGCCagacgcauuGCGCGCGUGCAGAgacucAUCGCCa- -3'
miRNA:   3'- -CGG---------UGCGUGCGCGUCUau---UAGCGGga -5'
25960 3' -55.5 NC_005337.1 + 72604 0.74 0.490608
Target:  5'- gGUCGCGCGCGgGCGuGGUGGU-GCCCg -3'
miRNA:   3'- -CGGUGCGUGCgCGU-CUAUUAgCGGGa -5'
25960 3' -55.5 NC_005337.1 + 53595 0.77 0.341425
Target:  5'- cGCaCAUGCGCGCGCGGAaGcgCGCCg- -3'
miRNA:   3'- -CG-GUGCGUGCGCGUCUaUuaGCGGga -5'
25960 3' -55.5 NC_005337.1 + 84918 0.76 0.373459
Target:  5'- aGCCGcCGCACGCGCcgcAGAagcaucgAGUUGCCCUc -3'
miRNA:   3'- -CGGU-GCGUGCGCG---UCUa------UUAGCGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.