miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25964 3' -56.1 NC_005337.1 + 95767 0.66 0.903772
Target:  5'- cCGCgaucgCGGCGACGucGUCgGCCaGCu -3'
miRNA:   3'- aGCGa----GCCGCUGCucUAGaUGGaCGc -5'
25964 3' -56.1 NC_005337.1 + 74672 0.66 0.903772
Target:  5'- -gGCUCGGCaACGcGAaggGCCUGUGg -3'
miRNA:   3'- agCGAGCCGcUGCuCUagaUGGACGC- -5'
25964 3' -56.1 NC_005337.1 + 51684 0.66 0.897389
Target:  5'- aCGCcuaCGGCGAgGccaGUCUgGCCUGCGa -3'
miRNA:   3'- aGCGa--GCCGCUgCuc-UAGA-UGGACGC- -5'
25964 3' -56.1 NC_005337.1 + 73877 0.66 0.890775
Target:  5'- -gGCUCauGGCcacggacauCGAGGUCUGCCUGgGc -3'
miRNA:   3'- agCGAG--CCGcu-------GCUCUAGAUGGACgC- -5'
25964 3' -56.1 NC_005337.1 + 1049 0.66 0.890775
Target:  5'- -gGCg-GGCGGCGGGAg--GCCgGCGg -3'
miRNA:   3'- agCGagCCGCUGCUCUagaUGGaCGC- -5'
25964 3' -56.1 NC_005337.1 + 1049 0.66 0.890775
Target:  5'- -gGCg-GGCGGCGGGAg--GCCgGCGg -3'
miRNA:   3'- agCGagCCGCUGCUCUagaUGGaCGC- -5'
25964 3' -56.1 NC_005337.1 + 115501 0.66 0.883934
Target:  5'- gCGC-CGGCcucGCGAGGUCgacgACCUGg- -3'
miRNA:   3'- aGCGaGCCGc--UGCUCUAGa---UGGACgc -5'
25964 3' -56.1 NC_005337.1 + 1647 0.66 0.883238
Target:  5'- gCGCgcccgCGGCGACGAGcUUgGCCgccgccgcgucguUGCGg -3'
miRNA:   3'- aGCGa----GCCGCUGCUCuAGaUGG-------------ACGC- -5'
25964 3' -56.1 NC_005337.1 + 75045 0.66 0.87687
Target:  5'- cUGCUUGGCGGaGAGGUCgguguCC-GCGg -3'
miRNA:   3'- aGCGAGCCGCUgCUCUAGau---GGaCGC- -5'
25964 3' -56.1 NC_005337.1 + 104303 0.67 0.862091
Target:  5'- cCGCgagggcgCGGCGGCGc--UCUGCgUGCGu -3'
miRNA:   3'- aGCGa------GCCGCUGCucuAGAUGgACGC- -5'
25964 3' -56.1 NC_005337.1 + 66334 0.67 0.86133
Target:  5'- aUCGUcuUCGGCGACGGGG-CcACCUuccuggaguucaaGCGa -3'
miRNA:   3'- -AGCG--AGCCGCUGCUCUaGaUGGA-------------CGC- -5'
25964 3' -56.1 NC_005337.1 + 61089 0.67 0.854388
Target:  5'- -aGCUCGGCGACGAGG-CggugguagUGCGc -3'
miRNA:   3'- agCGAGCCGCUGCUCUaGaugg----ACGC- -5'
25964 3' -56.1 NC_005337.1 + 77155 0.67 0.854388
Target:  5'- -gGCUggCGGCGAccaCGGGGUaCUGCCgGCGc -3'
miRNA:   3'- agCGA--GCCGCU---GCUCUA-GAUGGaCGC- -5'
25964 3' -56.1 NC_005337.1 + 651 0.67 0.854388
Target:  5'- cUGCaCGGCGACGGuGAcCU-CCUGCa -3'
miRNA:   3'- aGCGaGCCGCUGCU-CUaGAuGGACGc -5'
25964 3' -56.1 NC_005337.1 + 651 0.67 0.854388
Target:  5'- cUGCaCGGCGACGGuGAcCU-CCUGCa -3'
miRNA:   3'- aGCGaGCCGCUGCU-CUaGAuGGACGc -5'
25964 3' -56.1 NC_005337.1 + 102578 0.67 0.846484
Target:  5'- cUCGCUCGuGCGcaaGAuGGUCUA-CUGCGu -3'
miRNA:   3'- -AGCGAGC-CGCug-CU-CUAGAUgGACGC- -5'
25964 3' -56.1 NC_005337.1 + 76582 0.67 0.838384
Target:  5'- gCGCacUCGGUGAUgGGGAUCUugaACUUGCu -3'
miRNA:   3'- aGCG--AGCCGCUG-CUCUAGA---UGGACGc -5'
25964 3' -56.1 NC_005337.1 + 90647 0.67 0.838384
Target:  5'- aUCGCgCGGCGGCGcuGAUCUcggagcGgCUGCu -3'
miRNA:   3'- -AGCGaGCCGCUGCu-CUAGA------UgGACGc -5'
25964 3' -56.1 NC_005337.1 + 71612 0.67 0.838384
Target:  5'- aCGCgaucaCGGaCGACGAcAUCcGCCUGCu -3'
miRNA:   3'- aGCGa----GCC-GCUGCUcUAGaUGGACGc -5'
25964 3' -56.1 NC_005337.1 + 40526 0.68 0.821632
Target:  5'- gCGCUacCGGCGAgGAGG-CUugCgccgGCGg -3'
miRNA:   3'- aGCGA--GCCGCUgCUCUaGAugGa---CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.