miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 5' -58.3 NC_005345.2 + 40522 1.08 0.000455
Target:  5'- gAGCAGUCACGACUGCUCACCCCCGACc -3'
miRNA:   3'- -UCGUCAGUGCUGACGAGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 29784 0.77 0.105722
Target:  5'- cGCcgAGUCccucgaagACGACUacgcGCUCGCCCCCGGCg -3'
miRNA:   3'- uCG--UCAG--------UGCUGA----CGAGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 20609 0.75 0.132168
Target:  5'- gAGCcgAGcCACGACUGaucgUCGCCCCCGAa -3'
miRNA:   3'- -UCG--UCaGUGCUGACg---AGUGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 8634 0.75 0.132168
Target:  5'- gAGCAGUCGUGACUGCUCucuCUCCCuACc -3'
miRNA:   3'- -UCGUCAGUGCUGACGAGu--GGGGGcUG- -5'
26268 5' -58.3 NC_005345.2 + 3537 0.74 0.155874
Target:  5'- cGGCGGUgACG-CUGUgacgaUCACCCUCGACc -3'
miRNA:   3'- -UCGUCAgUGCuGACG-----AGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 14430 0.74 0.160181
Target:  5'- gGGCgaucgaGGUCGCGcuCUGCUCGCUCgCCGACu -3'
miRNA:   3'- -UCG------UCAGUGCu-GACGAGUGGG-GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 39277 0.73 0.190366
Target:  5'- cGGCGcGUCGgGACUGCucgaccgcguccugaUCACCUCUGACg -3'
miRNA:   3'- -UCGU-CAGUgCUGACG---------------AGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 1149 0.72 0.209461
Target:  5'- uGGCGGUCGUGACUGCUCGgUCC-GGCu -3'
miRNA:   3'- -UCGUCAGUGCUGACGAGUgGGGgCUG- -5'
26268 5' -58.3 NC_005345.2 + 22758 0.72 0.211681
Target:  5'- aGGuCGGUCGCGucgaGCUGCccgaacugcguguucUCACCCuCCGACg -3'
miRNA:   3'- -UC-GUCAGUGC----UGACG---------------AGUGGG-GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 13576 0.72 0.225434
Target:  5'- cGGCGG-CGCGACgaagaucgugugGCUCgACCCgCCGGCg -3'
miRNA:   3'- -UCGUCaGUGCUGa-----------CGAG-UGGG-GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 44095 0.71 0.244942
Target:  5'- cGCAG-CAC-ACcgGCUCGCCCUCGAUg -3'
miRNA:   3'- uCGUCaGUGcUGa-CGAGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 37808 0.71 0.257176
Target:  5'- uGGCGGugccgcucacugcUCGCGGC-GCUCGCCUCaCGGCg -3'
miRNA:   3'- -UCGUC-------------AGUGCUGaCGAGUGGGG-GCUG- -5'
26268 5' -58.3 NC_005345.2 + 25681 0.7 0.285273
Target:  5'- cGguG-CAcCGGCUGCUCGCgCUCGGCg -3'
miRNA:   3'- uCguCaGU-GCUGACGAGUGgGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 11547 0.7 0.299835
Target:  5'- cGCAG-CACGACcgcgaaGUUCAUCgCCCGGCa -3'
miRNA:   3'- uCGUCaGUGCUGa-----CGAGUGG-GGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 38518 0.7 0.307329
Target:  5'- --gAGUCACGcguGCUGCUCgACCCgggCCGACc -3'
miRNA:   3'- ucgUCAGUGC---UGACGAG-UGGG---GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 25186 0.69 0.314196
Target:  5'- cGCGGcCGCGACaGCagcccgcggugaaUCACCCgCCGGCc -3'
miRNA:   3'- uCGUCaGUGCUGaCG-------------AGUGGG-GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 34307 0.69 0.314966
Target:  5'- aAGCAGUCGCaGCUcGCcgUCGCCCUguuCGGCa -3'
miRNA:   3'- -UCGUCAGUGcUGA-CG--AGUGGGG---GCUG- -5'
26268 5' -58.3 NC_005345.2 + 40412 0.69 0.314966
Target:  5'- uGCAGUCGuCG-C-GCUCGCCaCCGACg -3'
miRNA:   3'- uCGUCAGU-GCuGaCGAGUGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 39245 0.69 0.322745
Target:  5'- -cCGGUCAUucCUGCUCGCCgCCGAg -3'
miRNA:   3'- ucGUCAGUGcuGACGAGUGGgGGCUg -5'
26268 5' -58.3 NC_005345.2 + 14915 0.69 0.322745
Target:  5'- cGCGuUCGCGGCcgUGC-CGCCCCgGGCg -3'
miRNA:   3'- uCGUcAGUGCUG--ACGaGUGGGGgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.