miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26268 5' -58.3 NC_005345.2 + 14915 0.69 0.322745
Target:  5'- cGCGuUCGCGGCcgUGC-CGCCCCgGGCg -3'
miRNA:   3'- uCGUcAGUGCUG--ACGaGUGGGGgCUG- -5'
26268 5' -58.3 NC_005345.2 + 35714 0.69 0.33873
Target:  5'- uGcCGGaCGCGccgaaACUGCUCGCCCgCGGCg -3'
miRNA:   3'- uC-GUCaGUGC-----UGACGAGUGGGgGCUG- -5'
26268 5' -58.3 NC_005345.2 + 4950 0.69 0.33873
Target:  5'- uGGCGGUCACGgagacccacACgUGCUCGCaCUgCGACc -3'
miRNA:   3'- -UCGUCAGUGC---------UG-ACGAGUG-GGgGCUG- -5'
26268 5' -58.3 NC_005345.2 + 8461 0.69 0.346936
Target:  5'- cGCGGUCGCGACUcccguuucgggGUUCuCCCCgCGGa -3'
miRNA:   3'- uCGUCAGUGCUGA-----------CGAGuGGGG-GCUg -5'
26268 5' -58.3 NC_005345.2 + 18912 0.69 0.346936
Target:  5'- cGCAccGUCGuCGACcgGCUCACCgCCGGa -3'
miRNA:   3'- uCGU--CAGU-GCUGa-CGAGUGGgGGCUg -5'
26268 5' -58.3 NC_005345.2 + 4094 0.69 0.355283
Target:  5'- cGGUcgAG-CACGACggGCaCACCCCCGAg -3'
miRNA:   3'- -UCG--UCaGUGCUGa-CGaGUGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 22712 0.68 0.367204
Target:  5'- gAGCAuGUCGCGcACgucGCUCGCgugcucuuucaggaaCCCCGACn -3'
miRNA:   3'- -UCGU-CAGUGC-UGa--CGAGUG---------------GGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 9503 0.68 0.372397
Target:  5'- uGGCAGUCGCGGgccCUGUgcgCGCagaCCGACc -3'
miRNA:   3'- -UCGUCAGUGCU---GACGa--GUGgg-GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 10103 0.68 0.372397
Target:  5'- gAGCGGcacaugcgCgACGACUGCccCAUCCCCGAg -3'
miRNA:   3'- -UCGUCa-------G-UGCUGACGa-GUGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 13683 0.68 0.372397
Target:  5'- cGCcGUCG-GGCaGCUCGCCCUCGAa -3'
miRNA:   3'- uCGuCAGUgCUGaCGAGUGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 13446 0.68 0.381161
Target:  5'- cGGCGcGUC-CGGCaGCUUGCCCagaCCGACg -3'
miRNA:   3'- -UCGU-CAGuGCUGaCGAGUGGG---GGCUG- -5'
26268 5' -58.3 NC_005345.2 + 20040 0.68 0.399099
Target:  5'- gAGCAGcCGCGGCggaugGUUCacggaGCCCUCGAa -3'
miRNA:   3'- -UCGUCaGUGCUGa----CGAG-----UGGGGGCUg -5'
26268 5' -58.3 NC_005345.2 + 24936 0.68 0.408268
Target:  5'- gAGCAGccgcCGCGAUcgaaCUCGgCCCCGACg -3'
miRNA:   3'- -UCGUCa---GUGCUGac--GAGUgGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 20896 0.68 0.408268
Target:  5'- cGCAcUCAcugcccCGAUUGacagCGCCCCCGACa -3'
miRNA:   3'- uCGUcAGU------GCUGACga--GUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 41701 0.67 0.415698
Target:  5'- cGCGGUCACGAuccggucCUGCUCgacgucaACgCCCGuCg -3'
miRNA:   3'- uCGUCAGUGCU-------GACGAG-------UGgGGGCuG- -5'
26268 5' -58.3 NC_005345.2 + 45639 0.67 0.426996
Target:  5'- cGCAGuucgcUCAUGACgucCUCGCCUgCGACg -3'
miRNA:   3'- uCGUC-----AGUGCUGac-GAGUGGGgGCUG- -5'
26268 5' -58.3 NC_005345.2 + 29152 0.67 0.426996
Target:  5'- cGGCAGcC-CGcCUG-UCGCCCUCGGCg -3'
miRNA:   3'- -UCGUCaGuGCuGACgAGUGGGGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 12651 0.67 0.426996
Target:  5'- gAGCGGgcgCACuGGCUGaacugCGCCCCCacGGCa -3'
miRNA:   3'- -UCGUCa--GUG-CUGACga---GUGGGGG--CUG- -5'
26268 5' -58.3 NC_005345.2 + 30365 0.67 0.426996
Target:  5'- cGGCGGUCGCgcagaGACuUGCUCcgcaguacacGCCgCCGGCc -3'
miRNA:   3'- -UCGUCAGUG-----CUG-ACGAG----------UGGgGGCUG- -5'
26268 5' -58.3 NC_005345.2 + 36436 0.67 0.427946
Target:  5'- uGCGGUacgcgcugucccgcUACGGCUcGCUCGCCucggccuacaaccgaCCCGGCg -3'
miRNA:   3'- uCGUCA--------------GUGCUGA-CGAGUGG---------------GGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.