miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26269 3' -56.7 NC_005345.2 + 48215 0.69 0.434181
Target:  5'- uUCAACCCggcGGCCGACcuggacauUGGCGagGCg-- -3'
miRNA:   3'- -AGUUGGG---CCGGCUGu-------ACCGCa-CGaac -5'
26269 3' -56.7 NC_005345.2 + 4546 0.69 0.434181
Target:  5'- aCGACCCGGaCGACGgcaGCGUGUa-- -3'
miRNA:   3'- aGUUGGGCCgGCUGUac-CGCACGaac -5'
26269 3' -56.7 NC_005345.2 + 23856 0.69 0.434181
Target:  5'- cCAGCCCGGCCGGgAcgacGGCGaGCc-- -3'
miRNA:   3'- aGUUGGGCCGGCUgUa---CCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 30568 0.68 0.453757
Target:  5'- uUCGACCCGGCgguguuccCGACGcugGGCGcGCa-- -3'
miRNA:   3'- -AGUUGGGCCG--------GCUGUa--CCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 2044 0.68 0.473802
Target:  5'- -gGGCCCGGCgCGGCccGGCGgGCc-- -3'
miRNA:   3'- agUUGGGCCG-GCUGuaCCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 19984 0.68 0.473802
Target:  5'- cCGACCCGGUucgccgagggCGACA-GGCGgGCUg- -3'
miRNA:   3'- aGUUGGGCCG----------GCUGUaCCGCaCGAac -5'
26269 3' -56.7 NC_005345.2 + 40279 0.68 0.473802
Target:  5'- aCGGCCCGGCCGugAUcGUGgGCc-- -3'
miRNA:   3'- aGUUGGGCCGGCugUAcCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 22021 0.68 0.48399
Target:  5'- cUCGACgCCGGCCGGugccgcCGUGGCGccgaGCa-- -3'
miRNA:   3'- -AGUUG-GGCCGGCU------GUACCGCa---CGaac -5'
26269 3' -56.7 NC_005345.2 + 41543 0.68 0.494282
Target:  5'- gCGACCUGGUCGACGacGuCGUGCg-- -3'
miRNA:   3'- aGUUGGGCCGGCUGUacC-GCACGaac -5'
26269 3' -56.7 NC_005345.2 + 27700 0.68 0.494282
Target:  5'- gUCGACCUGGUUcGCAUGGUGUccGCa-- -3'
miRNA:   3'- -AGUUGGGCCGGcUGUACCGCA--CGaac -5'
26269 3' -56.7 NC_005345.2 + 6715 0.68 0.494282
Target:  5'- gCAG-CCGGCgGGCAcGGUGUGCa-- -3'
miRNA:   3'- aGUUgGGCCGgCUGUaCCGCACGaac -5'
26269 3' -56.7 NC_005345.2 + 6177 0.67 0.504673
Target:  5'- aCAcGCCCGGCCcgguuCGUGcGCGUGCc-- -3'
miRNA:   3'- aGU-UGGGCCGGcu---GUAC-CGCACGaac -5'
26269 3' -56.7 NC_005345.2 + 23611 0.67 0.504673
Target:  5'- gCGACgCCGGCgGACcgGGCacgGCUg- -3'
miRNA:   3'- aGUUG-GGCCGgCUGuaCCGca-CGAac -5'
26269 3' -56.7 NC_005345.2 + 6939 0.67 0.515157
Target:  5'- aCuuCCCGGUCGuCAUGGUgGUGCc-- -3'
miRNA:   3'- aGuuGGGCCGGCuGUACCG-CACGaac -5'
26269 3' -56.7 NC_005345.2 + 42853 0.67 0.515157
Target:  5'- -gAACCCGGCCGGgAUgaaGGCG-GCc-- -3'
miRNA:   3'- agUUGGGCCGGCUgUA---CCGCaCGaac -5'
26269 3' -56.7 NC_005345.2 + 9325 0.67 0.522548
Target:  5'- gCGACCCGGgCGgcgaccagugcgacGCAUGGUG-GCUg- -3'
miRNA:   3'- aGUUGGGCCgGC--------------UGUACCGCaCGAac -5'
26269 3' -56.7 NC_005345.2 + 14690 0.67 0.525728
Target:  5'- cCGGgCCGGCCGugccCGUGGUGUgGCg-- -3'
miRNA:   3'- aGUUgGGCCGGCu---GUACCGCA-CGaac -5'
26269 3' -56.7 NC_005345.2 + 32988 0.67 0.53638
Target:  5'- cUCGGCgcaggCGGCCGGgGUGGCGgggGCg-- -3'
miRNA:   3'- -AGUUGg----GCCGGCUgUACCGCa--CGaac -5'
26269 3' -56.7 NC_005345.2 + 3854 0.67 0.547105
Target:  5'- -gGACCCGGCUGAUc-GGCGUcgGCg-- -3'
miRNA:   3'- agUUGGGCCGGCUGuaCCGCA--CGaac -5'
26269 3' -56.7 NC_005345.2 + 16861 0.66 0.568751
Target:  5'- gCAGCUgcaggcgcgguaCGGCCGAgCGUGGCG-GCg-- -3'
miRNA:   3'- aGUUGG------------GCCGGCU-GUACCGCaCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.