Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26827 | 3' | -64.4 | NC_005809.1 | + | 677 | 0.69 | 0.141258 |
Target: 5'- cAGGCCGCCuacggcggCGCCG-GCcGGGCcGCc -3' miRNA: 3'- -UCCGGCGGca------GCGGCgCGaCCCGuUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 1284 | 0.7 | 0.104859 |
Target: 5'- gAGGugaugcCCGCCcacacCGCCGCGCccaGGGCGACg -3' miRNA: 3'- -UCC------GGCGGca---GCGGCGCGa--CCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 1371 | 0.72 | 0.077202 |
Target: 5'- uGGUgGCCGUCGCCcuggGCGCggcggugUGGGCGGg -3' miRNA: 3'- uCCGgCGGCAGCGG----CGCG-------ACCCGUUg -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 1522 | 0.69 | 0.129965 |
Target: 5'- gAGGCCGCCGaccgCGCCGUcaagaagguguuuGCcaucuUGGGCGu- -3' miRNA: 3'- -UCCGGCGGCa---GCGGCG-------------CG-----ACCCGUug -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 2155 | 0.7 | 0.107178 |
Target: 5'- uGGGCgCGCUacauggacgacaUCGUgGUGCUGGGCGACg -3' miRNA: 3'- -UCCG-GCGGc-----------AGCGgCGCGACCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 3548 | 0.69 | 0.13752 |
Target: 5'- aGGaGCCGCCGaauagCGCagcagCGgGCUGGGCGuACa -3' miRNA: 3'- -UC-CGGCGGCa----GCG-----GCgCGACCCGU-UG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 3749 | 0.68 | 0.157154 |
Target: 5'- uGGGCaCGUCGgUGCCGcCGCUGGacGUAGCc -3' miRNA: 3'- -UCCG-GCGGCaGCGGC-GCGACC--CGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 3883 | 0.67 | 0.184036 |
Target: 5'- uAGGCCgcgcuGCCGUCGCCGCcgaaCUuGGUAGa -3' miRNA: 3'- -UCCGG-----CGGCAGCGGCGc---GAcCCGUUg -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 4354 | 0.69 | 0.141258 |
Target: 5'- uGGCCGUugCGUUGCCgguGCGCgugaaGGCGACg -3' miRNA: 3'- uCCGGCG--GCAGCGG---CGCGac---CCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 4447 | 0.73 | 0.071216 |
Target: 5'- aAGGCCgacaagucgGCCGUCGCCuucacGCGCaccGGCAACg -3' miRNA: 3'- -UCCGG---------CGGCAGCGG-----CGCGac-CCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 4944 | 1.09 | 0.000087 |
Target: 5'- gAGGCCGCCGUCGCCGCGCUGGGCAACg -3' miRNA: 3'- -UCCGGCGGCAGCGGCGCGACCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 5633 | 0.66 | 0.209463 |
Target: 5'- cGGCCagcguuggcGCCGUCGauaCCGUGgC-GGGCGACc -3' miRNA: 3'- uCCGG---------CGGCAGC---GGCGC-GaCCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 6242 | 0.68 | 0.153035 |
Target: 5'- aGGGCCugcacGCCGguaacggUGCgguugaucugCGCGCUGGGCAGg -3' miRNA: 3'- -UCCGG-----CGGCa------GCG----------GCGCGACCCGUUg -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 6650 | 0.68 | 0.174651 |
Target: 5'- uGG-UGCCG--GCCGUGCUGGGCuACu -3' miRNA: 3'- uCCgGCGGCagCGGCGCGACCCGuUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 6911 | 0.74 | 0.052321 |
Target: 5'- gGGGCCuacgaaaagGCCGUCGCCGa---GGGCAACg -3' miRNA: 3'- -UCCGG---------CGGCAGCGGCgcgaCCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 8212 | 0.67 | 0.188893 |
Target: 5'- cGGCC-UCGUaGUCGCGCUGGuCGGCg -3' miRNA: 3'- uCCGGcGGCAgCGGCGCGACCcGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 8748 | 0.66 | 0.23135 |
Target: 5'- aGGGCgCGCgCGUauucacgUGCCGCuucGGGCAGCa -3' miRNA: 3'- -UCCG-GCG-GCA-------GCGGCGcgaCCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 8977 | 0.66 | 0.226133 |
Target: 5'- cGGUaaCGCCucgauuuccUCGCCGCGCggGGGCGc- -3' miRNA: 3'- uCCG--GCGGc--------AGCGGCGCGa-CCCGUug -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 9320 | 0.68 | 0.165696 |
Target: 5'- uGGCggCGCaCGUCGgCGCgGC-GGGCGGCg -3' miRNA: 3'- uCCG--GCG-GCAGCgGCG-CGaCCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 10332 | 0.67 | 0.204146 |
Target: 5'- cAGGCCGUa---GCCGuCGCUGcGGCGu- -3' miRNA: 3'- -UCCGGCGgcagCGGC-GCGAC-CCGUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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