Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26827 | 3' | -64.4 | NC_005809.1 | + | 10548 | 0.7 | 0.107471 |
Target: 5'- cGGCCcguucggGCCGgUGCUGCGCgacuuccaGGGCGACg -3' miRNA: 3'- uCCGG-------CGGCaGCGGCGCGa-------CCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 10819 | 0.68 | 0.174651 |
Target: 5'- cGGGCCGaaGUCGagCGCGCccuUGGcgaGCAGCa -3' miRNA: 3'- -UCCGGCggCAGCg-GCGCG---ACC---CGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 11157 | 0.71 | 0.091152 |
Target: 5'- uGGGCCGCCugcgcacGUUGCgUGCGCUGGuCGGCc -3' miRNA: 3'- -UCCGGCGG-------CAGCG-GCGCGACCcGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 11592 | 0.77 | 0.032327 |
Target: 5'- aGGGCCGCCGgcugGCCGC-C-GGGCAGCa -3' miRNA: 3'- -UCCGGCGGCag--CGGCGcGaCCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 11651 | 0.69 | 0.133873 |
Target: 5'- cGGCCaGCCG--GCgGCcCUGGGCGGCa -3' miRNA: 3'- uCCGG-CGGCagCGgCGcGACCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 11834 | 0.67 | 0.188893 |
Target: 5'- cAGaCCgGCCG-CGCCGCGguuggcCUGGGCGAa -3' miRNA: 3'- -UCcGG-CGGCaGCGGCGC------GACCCGUUg -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 12092 | 0.66 | 0.23135 |
Target: 5'- uGGGCaagaccuCGCCGgccacgGCCGCGCUGcuGGcCGACg -3' miRNA: 3'- -UCCG-------GCGGCag----CGGCGCGAC--CC-GUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 12295 | 0.66 | 0.208926 |
Target: 5'- -uGCCGCUGUUGCCgguGUGCUgcgucccgaccagGGGCAGg -3' miRNA: 3'- ucCGGCGGCAGCGG---CGCGA-------------CCCGUUg -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 12358 | 0.76 | 0.037264 |
Target: 5'- -cGCCGCCGUaGCCGgcaCGCUGGGcCAGCa -3' miRNA: 3'- ucCGGCGGCAgCGGC---GCGACCC-GUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 12741 | 0.69 | 0.145088 |
Target: 5'- cGGGCC-UCGacacgCGCCuGCGCaugaUGGGCGACg -3' miRNA: 3'- -UCCGGcGGCa----GCGG-CGCG----ACCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 13084 | 0.72 | 0.086493 |
Target: 5'- gAGGCCGUCGcCaCUGCGCUGcGCGGCc -3' miRNA: 3'- -UCCGGCGGCaGcGGCGCGACcCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 13168 | 0.75 | 0.045437 |
Target: 5'- cGGCCagUGUCgGCCGCGCUGGGCGc- -3' miRNA: 3'- uCCGGcgGCAG-CGGCGCGACCCGUug -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 13454 | 0.68 | 0.174651 |
Target: 5'- -uGCCGCCuacaacCG-CGCGCUGGGCAu- -3' miRNA: 3'- ucCGGCGGca----GCgGCGCGACCCGUug -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 14348 | 0.73 | 0.065493 |
Target: 5'- uGGGCCGCa-UCGCCGacaGCaUGGuGCAGCa -3' miRNA: 3'- -UCCGGCGgcAGCGGCg--CG-ACC-CGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 14425 | 0.68 | 0.174651 |
Target: 5'- cAGGCgCGCCugcggCaCCGUGUUGGGCGAa -3' miRNA: 3'- -UCCG-GCGGca---GcGGCGCGACCCGUUg -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 14852 | 0.71 | 0.088916 |
Target: 5'- uGGCgGCCaG-CGCCGCacGCUGGGCGc- -3' miRNA: 3'- uCCGgCGG-CaGCGGCG--CGACCCGUug -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 14974 | 0.71 | 0.103151 |
Target: 5'- gAGGCCgGCCagcagcagaUCGCCGCGCagacccugaaagccGGGCAACu -3' miRNA: 3'- -UCCGG-CGGc--------AGCGGCGCGa-------------CCCGUUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 15688 | 0.68 | 0.169674 |
Target: 5'- cAGGCCGCUaUCGacgaagaaggcguCCGC-CUGGGCAu- -3' miRNA: 3'- -UCCGGCGGcAGC-------------GGCGcGACCCGUug -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 15846 | 0.66 | 0.220455 |
Target: 5'- -cGCCGuCCGU-GUCGUGCUGGuGCcACg -3' miRNA: 3'- ucCGGC-GGCAgCGGCGCGACC-CGuUG- -5' |
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26827 | 3' | -64.4 | NC_005809.1 | + | 16291 | 0.68 | 0.149013 |
Target: 5'- aAGGCUacccgGUCGUCGUCGCGCacGGGaAGCg -3' miRNA: 3'- -UCCGG-----CGGCAGCGGCGCGa-CCCgUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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