miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29402 3' -56.8 NC_006151.1 + 116769 1.11 0.001367
Target:  5'- gAGAAGAGCAGCGUGUGCUCCAGCCGCu -3'
miRNA:   3'- -UCUUCUCGUCGCACACGAGGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 6117 0.82 0.127346
Target:  5'- aGGAcGGGGCGGCcucGUG-GCUCCGGCCGCg -3'
miRNA:   3'- -UCU-UCUCGUCG---CACaCGAGGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 74515 0.76 0.334231
Target:  5'- cGGggGcAGCAGCGUG-GCguccgCCAGCgCGUg -3'
miRNA:   3'- -UCuuC-UCGUCGCACaCGa----GGUCG-GCG- -5'
29402 3' -56.8 NC_006151.1 + 61645 0.75 0.382076
Target:  5'- ----cGGCGGCGUGUGgacgcgCCAGCCGCu -3'
miRNA:   3'- ucuucUCGUCGCACACga----GGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 3401 0.74 0.425284
Target:  5'- cGGAGGGccGCGGCGUGUGggucucgCCGGCCGg -3'
miRNA:   3'- -UCUUCU--CGUCGCACACga-----GGUCGGCg -5'
29402 3' -56.8 NC_006151.1 + 31583 0.73 0.43427
Target:  5'- cGGggGGGCGGCGc--GCUCCGcgcucccccGCCGCc -3'
miRNA:   3'- -UCuuCUCGUCGCacaCGAGGU---------CGGCG- -5'
29402 3' -56.8 NC_006151.1 + 59567 0.73 0.452566
Target:  5'- cGggGGcCAGCGccgccaGCUCCAGCCGCc -3'
miRNA:   3'- uCuuCUcGUCGCaca---CGAGGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 134553 0.73 0.461871
Target:  5'- uGGGAGAGCGGCccGUGCcgcuuccggaUCCAGaaCCGCg -3'
miRNA:   3'- -UCUUCUCGUCGcaCACG----------AGGUC--GGCG- -5'
29402 3' -56.8 NC_006151.1 + 126378 0.72 0.500048
Target:  5'- aAGAAGAaCAGCGggcccgcgcUGCUggCCAGCCGCg -3'
miRNA:   3'- -UCUUCUcGUCGCac-------ACGA--GGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 14060 0.72 0.509812
Target:  5'- -aAAGGGguGCGUGgcgGC-CCGGCCGa -3'
miRNA:   3'- ucUUCUCguCGCACa--CGaGGUCGGCg -5'
29402 3' -56.8 NC_006151.1 + 103670 0.72 0.519656
Target:  5'- gAGAAGGcggcgcgcGCGGCGgggGUGCUgCGcGCCGCc -3'
miRNA:   3'- -UCUUCU--------CGUCGCa--CACGAgGU-CGGCG- -5'
29402 3' -56.8 NC_006151.1 + 71682 0.72 0.529573
Target:  5'- ---cGGGCcgcgugccgAGCGUGUcGC-CCAGCCGCg -3'
miRNA:   3'- ucuuCUCG---------UCGCACA-CGaGGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 20149 0.72 0.539558
Target:  5'- -cGGGGGCGGCGcGUGgaCCgccgGGCCGCg -3'
miRNA:   3'- ucUUCUCGUCGCaCACgaGG----UCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 81509 0.71 0.549607
Target:  5'- -cGAGAGCGcggcccGCGUGaGCUCggCGGCCGCg -3'
miRNA:   3'- ucUUCUCGU------CGCACaCGAG--GUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 91564 0.71 0.559713
Target:  5'- cGggGcgauGGCGGCGcgcgcGUGCUCCAGgUGCu -3'
miRNA:   3'- uCuuC----UCGUCGCa----CACGAGGUCgGCG- -5'
29402 3' -56.8 NC_006151.1 + 76695 0.71 0.590312
Target:  5'- gGGGAGAGUGGCGcGgGCgcgCCgcGGCCGCc -3'
miRNA:   3'- -UCUUCUCGUCGCaCaCGa--GG--UCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 21434 0.7 0.600582
Target:  5'- cGGggGucGCGGCGUGgggugGCccCCGGCgGCg -3'
miRNA:   3'- -UCuuCu-CGUCGCACa----CGa-GGUCGgCG- -5'
29402 3' -56.8 NC_006151.1 + 104634 0.7 0.610877
Target:  5'- cGAGGAGguGaCGUacGUGCgCgCGGCCGCc -3'
miRNA:   3'- uCUUCUCguC-GCA--CACGaG-GUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 111121 0.7 0.621187
Target:  5'- cGggGAGCGcGCGUcuGUGCgcgCCcccgcgcgcgcGGCCGCc -3'
miRNA:   3'- uCuuCUCGU-CGCA--CACGa--GG-----------UCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 113694 0.7 0.621187
Target:  5'- cGAGGGGC-GCGUGUGCggggAGCUGUg -3'
miRNA:   3'- uCUUCUCGuCGCACACGagg-UCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.