miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29402 3' -56.8 NC_006151.1 + 2329 0.66 0.834605
Target:  5'- cGggGcGGCcucGGCGUcggGCUCCAgcagcGCCGCg -3'
miRNA:   3'- uCuuC-UCG---UCGCAca-CGAGGU-----CGGCG- -5'
29402 3' -56.8 NC_006151.1 + 3401 0.74 0.425284
Target:  5'- cGGAGGGccGCGGCGUGUGggucucgCCGGCCGg -3'
miRNA:   3'- -UCUUCU--CGUCGCACACga-----GGUCGGCg -5'
29402 3' -56.8 NC_006151.1 + 3680 0.66 0.85092
Target:  5'- --cGGGGCGGCGg--GCcCCGGgCGCg -3'
miRNA:   3'- ucuUCUCGUCGCacaCGaGGUCgGCG- -5'
29402 3' -56.8 NC_006151.1 + 3966 0.66 0.826164
Target:  5'- gGGccGcGCGGCGgccucgGCgagCCGGCCGCg -3'
miRNA:   3'- -UCuuCuCGUCGCaca---CGa--GGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 6117 0.82 0.127346
Target:  5'- aGGAcGGGGCGGCcucGUG-GCUCCGGCCGCg -3'
miRNA:   3'- -UCU-UCUCGUCG---CACaCGAGGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 10009 0.66 0.85092
Target:  5'- -cGAGAGCGGCGgcgGCggUC-GCCGCg -3'
miRNA:   3'- ucUUCUCGUCGCacaCGa-GGuCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 10407 0.66 0.866428
Target:  5'- gGGGAGAGCGGgGUGacgccGCgggUgGGCCGa -3'
miRNA:   3'- -UCUUCUCGUCgCACa----CGa--GgUCGGCg -5'
29402 3' -56.8 NC_006151.1 + 10461 0.66 0.840404
Target:  5'- aGGAGGAcGCGGCGgcgGUgaaggaggagagccGC-CCGGCgCGCg -3'
miRNA:   3'- -UCUUCU-CGUCGCa--CA--------------CGaGGUCG-GCG- -5'
29402 3' -56.8 NC_006151.1 + 11802 0.67 0.790686
Target:  5'- gAGAGGGGCGGgGUGgggugggggGCggCGGCgGCu -3'
miRNA:   3'- -UCUUCUCGUCgCACa--------CGagGUCGgCG- -5'
29402 3' -56.8 NC_006151.1 + 14060 0.72 0.509812
Target:  5'- -aAAGGGguGCGUGgcgGC-CCGGCCGa -3'
miRNA:   3'- ucUUCUCguCGCACa--CGaGGUCGGCg -5'
29402 3' -56.8 NC_006151.1 + 17704 0.66 0.85092
Target:  5'- aGGAAG-GCuGCuGUGUGCgcCCGGgUGCg -3'
miRNA:   3'- -UCUUCuCGuCG-CACACGa-GGUCgGCG- -5'
29402 3' -56.8 NC_006151.1 + 19294 0.66 0.858778
Target:  5'- cGggGccAGCGGCGcGgGCggCCGGUCGCc -3'
miRNA:   3'- uCuuC--UCGUCGCaCaCGa-GGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 20149 0.72 0.539558
Target:  5'- -cGGGGGCGGCGcGUGgaCCgccgGGCCGCg -3'
miRNA:   3'- ucUUCUCGUCGCaCACgaGG----UCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 21434 0.7 0.600582
Target:  5'- cGGggGucGCGGCGUGgggugGCccCCGGCgGCg -3'
miRNA:   3'- -UCuuCu-CGUCGCACa----CGa-GGUCGgCG- -5'
29402 3' -56.8 NC_006151.1 + 23444 0.68 0.753856
Target:  5'- uGGGAGGGUggccccggGGCGggugaucgugagcccGUGCUUCAuGCCGCa -3'
miRNA:   3'- -UCUUCUCG--------UCGCa--------------CACGAGGU-CGGCG- -5'
29402 3' -56.8 NC_006151.1 + 25274 0.69 0.703277
Target:  5'- cGAGuuGguGUGUGUGCU-UGGCCGCg -3'
miRNA:   3'- uCUUcuCguCGCACACGAgGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 28178 0.7 0.652137
Target:  5'- --uGGGGCGGCGaGUGCcgUCGGCCGg -3'
miRNA:   3'- ucuUCUCGUCGCaCACGa-GGUCGGCg -5'
29402 3' -56.8 NC_006151.1 + 29578 0.69 0.703277
Target:  5'- gGGAGGAcggaucGCGGCG---GCUgCGGCCGCg -3'
miRNA:   3'- -UCUUCU------CGUCGCacaCGAgGUCGGCG- -5'
29402 3' -56.8 NC_006151.1 + 30761 0.68 0.752887
Target:  5'- gGGGcgGGGGCAGCacucagcgaaGgcucaggGUGUUCCAGCCGa -3'
miRNA:   3'- -UCU--UCUCGUCG----------Ca------CACGAGGUCGGCg -5'
29402 3' -56.8 NC_006151.1 + 31583 0.73 0.43427
Target:  5'- cGGggGGGCGGCGc--GCUCCGcgcucccccGCCGCc -3'
miRNA:   3'- -UCuuCUCGUCGCacaCGAGGU---------CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.