miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30694 5' -56.6 NC_006552.1 + 1379 0.68 0.538999
Target:  5'- uCGGCGcCCAGGCcagccaGcCGCCGGCg -3'
miRNA:   3'- uGUCGU-GGUCCGacuuaaC-GCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 2586 0.66 0.679855
Target:  5'- cGCGGCACgUGGGUUGAGUcUGCccgcauGCCaGCg -3'
miRNA:   3'- -UGUCGUG-GUCCGACUUA-ACG------CGGcCG- -5'
30694 5' -56.6 NC_006552.1 + 3207 0.67 0.592715
Target:  5'- uGCAGCAgCgAGGCcGAAcucUGCG-CGGCg -3'
miRNA:   3'- -UGUCGU-GgUCCGaCUUa--ACGCgGCCG- -5'
30694 5' -56.6 NC_006552.1 + 3325 1.02 0.002442
Target:  5'- uACAGC-CCAGGCUGAAUUGCGCCGGCu -3'
miRNA:   3'- -UGUCGuGGUCCGACUUAACGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 3437 0.72 0.300873
Target:  5'- cCAGCauGCCAGGCcu-GUUGCGgUGGCg -3'
miRNA:   3'- uGUCG--UGGUCCGacuUAACGCgGCCG- -5'
30694 5' -56.6 NC_006552.1 + 3838 0.73 0.286301
Target:  5'- cGCAGCaacgucgggaGCCGGGCcaUGuuuuGgcGCGCCGGCg -3'
miRNA:   3'- -UGUCG----------UGGUCCG--ACu---UaaCGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 4079 0.67 0.592715
Target:  5'- aGCGGCugCAGGacaucagcGAAgagcagGCGuuGGCa -3'
miRNA:   3'- -UGUCGugGUCCga------CUUaa----CGCggCCG- -5'
30694 5' -56.6 NC_006552.1 + 5572 0.66 0.658134
Target:  5'- gGCAGaACuCGGGCcGGGagGUGCUGGCu -3'
miRNA:   3'- -UGUCgUG-GUCCGaCUUaaCGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 5790 0.66 0.625399
Target:  5'- gGCAGCGUCAGGCg-----GUGgCGGCg -3'
miRNA:   3'- -UGUCGUGGUCCGacuuaaCGCgGCCG- -5'
30694 5' -56.6 NC_006552.1 + 6573 0.69 0.476927
Target:  5'- gGCcGCGCCGGGCagacUGAAccGCGaCCGGg -3'
miRNA:   3'- -UGuCGUGGUCCG----ACUUaaCGC-GGCCg -5'
30694 5' -56.6 NC_006552.1 + 8477 0.73 0.293516
Target:  5'- cGCGGgACCGuGGCgagGAAcUGCGCCaGGCc -3'
miRNA:   3'- -UGUCgUGGU-CCGa--CUUaACGCGG-CCG- -5'
30694 5' -56.6 NC_006552.1 + 11399 0.69 0.457021
Target:  5'- -uGGCACCGGGUcgUGcucuUUG-GCCGGCu -3'
miRNA:   3'- ugUCGUGGUCCG--ACuu--AACgCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 13326 0.66 0.679855
Target:  5'- -gAGCGCCAgcGGCagGAGUUGgaaGCCaGCa -3'
miRNA:   3'- ugUCGUGGU--CCGa-CUUAACg--CGGcCG- -5'
30694 5' -56.6 NC_006552.1 + 14167 0.67 0.592715
Target:  5'- -gAGCGCCuGGCcGA----UGCCGGCg -3'
miRNA:   3'- ugUCGUGGuCCGaCUuaacGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 14900 0.7 0.400142
Target:  5'- -uGGCgcccGCCGGGCgcucaccgaAGUUGCGUCGGCa -3'
miRNA:   3'- ugUCG----UGGUCCGac-------UUAACGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 19812 0.67 0.603588
Target:  5'- cGCGGC-CCGGGCUc--UUGC-UCGGCg -3'
miRNA:   3'- -UGUCGuGGUCCGAcuuAACGcGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 20327 0.67 0.571074
Target:  5'- -aGGCAgCCAGGUcuugaaccaUGAGUUGggcagcgGCCGGCg -3'
miRNA:   3'- ugUCGU-GGUCCG---------ACUUAACg------CGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 20631 0.66 0.669011
Target:  5'- gGCAGCGCCugcugccuGGCacGAGUgagcagGCGCUcguaGGCg -3'
miRNA:   3'- -UGUCGUGGu-------CCGa-CUUAa-----CGCGG----CCG- -5'
30694 5' -56.6 NC_006552.1 + 20739 0.72 0.316011
Target:  5'- aGCAGCaACUGcGCUGccg-GCGCCGGCa -3'
miRNA:   3'- -UGUCG-UGGUcCGACuuaaCGCGGCCG- -5'
30694 5' -56.6 NC_006552.1 + 20796 0.66 0.625399
Target:  5'- aGCAGC-CC-GGC--GAUUGCgcuGCCGGCc -3'
miRNA:   3'- -UGUCGuGGuCCGacUUAACG---CGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.