miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33060 3' -44.4 NC_007497.1 + 23419 1.11 0.007543
Target:  5'- gAAAGAUGCAAACCAACAACGAACAGCc -3'
miRNA:   3'- -UUUCUACGUUUGGUUGUUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 19759 0.85 0.304324
Target:  5'- cGAAGcAUGCgGAGCCGACGACGGACAuGCa -3'
miRNA:   3'- -UUUC-UACG-UUUGGUUGUUGCUUGU-CG- -5'
33060 3' -44.4 NC_007497.1 + 13258 0.8 0.506948
Target:  5'- --uGAUGUAGA-CGACGAUGAGCAGCg -3'
miRNA:   3'- uuuCUACGUUUgGUUGUUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 6106 0.76 0.747927
Target:  5'- cGAAGAcaugGgAGACCAACGGCGAcauCGGCa -3'
miRNA:   3'- -UUUCUa---CgUUUGGUUGUUGCUu--GUCG- -5'
33060 3' -44.4 NC_007497.1 + 41236 0.75 0.759439
Target:  5'- cGGGcgGCGAacGCCGACGAUGcGGCGGCg -3'
miRNA:   3'- uUUCuaCGUU--UGGUUGUUGC-UUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 30321 0.75 0.770789
Target:  5'- --cGA-GCAGAaaAGCGACGAACAGCc -3'
miRNA:   3'- uuuCUaCGUUUggUUGUUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 23300 0.75 0.781962
Target:  5'- ----cUGCAGgcuGCCAGCGgcagcACGAGCAGCa -3'
miRNA:   3'- uuucuACGUU---UGGUUGU-----UGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 16990 0.74 0.821501
Target:  5'- cGAGGGUGCGAACgaAGCAucGCGAguauguguaauaggGCAGCa -3'
miRNA:   3'- -UUUCUACGUUUGg-UUGU--UGCU--------------UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 13598 0.74 0.841509
Target:  5'- -cAGGUGUucGACCuuccgcgcgcaccaGACGGCGAACAGCc -3'
miRNA:   3'- uuUCUACGu-UUGG--------------UUGUUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 38838 0.74 0.844419
Target:  5'- gGAGGAUGCGauGACCAccGCGAuCGAGgcCGGCa -3'
miRNA:   3'- -UUUCUACGU--UUGGU--UGUU-GCUU--GUCG- -5'
33060 3' -44.4 NC_007497.1 + 36837 0.73 0.863162
Target:  5'- cGAGGcgGCGGGCgucgagccggaCGACGACGAACAGa -3'
miRNA:   3'- -UUUCuaCGUUUG-----------GUUGUUGCUUGUCg -5'
33060 3' -44.4 NC_007497.1 + 22866 0.72 0.889009
Target:  5'- --cGGUGUuccAGCUAACGACGuGCAGCc -3'
miRNA:   3'- uuuCUACGu--UUGGUUGUUGCuUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 16763 0.72 0.896985
Target:  5'- aAAAGAgccccGCAcccgcGCCGGCgGACGAGCAGCc -3'
miRNA:   3'- -UUUCUa----CGUu----UGGUUG-UUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 17069 0.72 0.896985
Target:  5'- gGAAGggGCgGAACCGAUGGCGAuccCGGCc -3'
miRNA:   3'- -UUUCuaCG-UUUGGUUGUUGCUu--GUCG- -5'
33060 3' -44.4 NC_007497.1 + 16127 0.72 0.918904
Target:  5'- -uGGAUGCGgcgcauGGCCgAGCAugGaAACGGCg -3'
miRNA:   3'- uuUCUACGU------UUGG-UUGUugC-UUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 15596 0.71 0.943342
Target:  5'- --cGAUGCAGgugguGCUggAACAGCGAGCcgAGCg -3'
miRNA:   3'- uuuCUACGUU-----UGG--UUGUUGCUUG--UCG- -5'
33060 3' -44.4 NC_007497.1 + 14919 0.71 0.943342
Target:  5'- cGAGAUuUcgGCCAuguugggcgauGCGGCGAACAGCg -3'
miRNA:   3'- uUUCUAcGuuUGGU-----------UGUUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 36185 0.71 0.943342
Target:  5'- gGAGGAUGCGugGGCUGGCGucgACGGcCGGCg -3'
miRNA:   3'- -UUUCUACGU--UUGGUUGU---UGCUuGUCG- -5'
33060 3' -44.4 NC_007497.1 + 15876 0.7 0.948599
Target:  5'- uGAAGGccgcugcgcUGCAGACCuguuCAACGugcGACGGCg -3'
miRNA:   3'- -UUUCU---------ACGUUUGGuu--GUUGC---UUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 15336 0.7 0.948599
Target:  5'- -uGGAUGCGcGCCucGCGGCGcuCGGCc -3'
miRNA:   3'- uuUCUACGUuUGGu-UGUUGCuuGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.