miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33060 3' -44.4 NC_007497.1 + 12000 0.67 0.99252
Target:  5'- --uGAUGCcguGACgAuuGCcGCGAGCGGCg -3'
miRNA:   3'- uuuCUACGu--UUGgU--UGuUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 34569 0.68 0.984131
Target:  5'- --uGA-GCGAGCCuGCG-CGGGCGGCc -3'
miRNA:   3'- uuuCUaCGUUUGGuUGUuGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 4266 0.68 0.988077
Target:  5'- uGAGcgGCGugugcgucgccGAUCAGC-ACGGGCGGCu -3'
miRNA:   3'- uUUCuaCGU-----------UUGGUUGuUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 38609 0.68 0.988077
Target:  5'- --cGAUGCGGcCgCAACAGCGcacgcgcguuaAGCGGCa -3'
miRNA:   3'- uuuCUACGUUuG-GUUGUUGC-----------UUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 21312 0.68 0.98974
Target:  5'- gGAGGGUGacgaugGAACCGcGCGcCGGACGGCu -3'
miRNA:   3'- -UUUCUACg-----UUUGGU-UGUuGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 31095 0.67 0.991077
Target:  5'- --cGGUGCAauuccaucuuuccGACCAACcACGGAaAGCu -3'
miRNA:   3'- uuuCUACGU-------------UUGGUUGuUGCUUgUCG- -5'
33060 3' -44.4 NC_007497.1 + 26881 0.67 0.99252
Target:  5'- ----cUGCAcGCUGACGACGcgguACAGCu -3'
miRNA:   3'- uuucuACGUuUGGUUGUUGCu---UGUCG- -5'
33060 3' -44.4 NC_007497.1 + 2542 0.67 0.99252
Target:  5'- cGGGcGUGCGcGCCGGCGGCc-GCGGCg -3'
miRNA:   3'- uUUC-UACGUuUGGUUGUUGcuUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 15874 0.67 0.99252
Target:  5'- --uGAUGCuGAugCAACGaauugaggauGCGAugAGCu -3'
miRNA:   3'- uuuCUACG-UUugGUUGU----------UGCUugUCG- -5'
33060 3' -44.4 NC_007497.1 + 7858 0.68 0.98108
Target:  5'- --cGAUGCAAauacccgcuucucaGCCGGCAACu--CGGCg -3'
miRNA:   3'- uuuCUACGUU--------------UGGUUGUUGcuuGUCG- -5'
33060 3' -44.4 NC_007497.1 + 27985 0.69 0.979266
Target:  5'- --cGAUGUucACCGuguCGGCGAuCAGCg -3'
miRNA:   3'- uuuCUACGuuUGGUu--GUUGCUuGUCG- -5'
33060 3' -44.4 NC_007497.1 + 19907 0.69 0.979266
Target:  5'- cGAGucagGcCAGACCGucguGCGAGCAGCg -3'
miRNA:   3'- uUUCua--C-GUUUGGUugu-UGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 23300 0.75 0.781962
Target:  5'- ----cUGCAGgcuGCCAGCGgcagcACGAGCAGCa -3'
miRNA:   3'- uuucuACGUU---UGGUUGU-----UGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 17069 0.72 0.896985
Target:  5'- gGAAGggGCgGAACCGAUGGCGAuccCGGCc -3'
miRNA:   3'- -UUUCuaCG-UUUGGUUGUUGCUu--GUCG- -5'
33060 3' -44.4 NC_007497.1 + 16763 0.72 0.896985
Target:  5'- aAAAGAgccccGCAcccgcGCCGGCgGACGAGCAGCc -3'
miRNA:   3'- -UUUCUa----CGUu----UGGUUG-UUGCUUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 16127 0.72 0.918904
Target:  5'- -uGGAUGCGgcgcauGGCCgAGCAugGaAACGGCg -3'
miRNA:   3'- uuUCUACGU------UUGG-UUGUugC-UUGUCG- -5'
33060 3' -44.4 NC_007497.1 + 15596 0.71 0.943342
Target:  5'- --cGAUGCAGgugguGCUggAACAGCGAGCcgAGCg -3'
miRNA:   3'- uuuCUACGUU-----UGG--UUGUUGCUUG--UCG- -5'
33060 3' -44.4 NC_007497.1 + 29723 0.7 0.962801
Target:  5'- -cGGAUGCGAaugcACCAucGCAACGAuuucccccaugucuuCGGCg -3'
miRNA:   3'- uuUCUACGUU----UGGU--UGUUGCUu--------------GUCG- -5'
33060 3' -44.4 NC_007497.1 + 20258 0.7 0.964012
Target:  5'- ---aGUGCGGAUCGGCAaauggaauacgcggcGCGAugGGCg -3'
miRNA:   3'- uuucUACGUUUGGUUGU---------------UGCUugUCG- -5'
33060 3' -44.4 NC_007497.1 + 13493 0.69 0.979266
Target:  5'- -cAGGUGCAGACCG-CGAUauuCGGCu -3'
miRNA:   3'- uuUCUACGUUUGGUuGUUGcuuGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.