Results 1 - 20 of 207 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 2285 | 0.74 | 0.230103 |
Target: 5'- uUCCgGCCagguGGCGGCGGGcuUCCAGaGGGCCc -3' miRNA: 3'- -AGG-CGG----UCGCCGUCC--AGGUCcCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 3874 | 1.11 | 0.000595 |
Target: 5'- gUCCGCCAGCGGCAGGUCCAGGGGACCu -3' miRNA: 3'- -AGGCGGUCGCCGUCCAGGUCCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 12228 | 0.67 | 0.544727 |
Target: 5'- gUUGCUga-GGCcgGGGUCCAgGGGGACCc -3' miRNA: 3'- aGGCGGucgCCG--UCCAGGU-CCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 12609 | 0.66 | 0.640427 |
Target: 5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3' miRNA: 3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 12924 | 0.74 | 0.235435 |
Target: 5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3' miRNA: 3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 12966 | 0.67 | 0.535358 |
Target: 5'- aCC-CCGGCGGCuggccccgaggAGGcgCCAGgcgcGGGGCCg -3' miRNA: 3'- aGGcGGUCGCCG-----------UCCa-GGUC----CCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 13480 | 0.66 | 0.640427 |
Target: 5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3' miRNA: 3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 15297 | 0.67 | 0.544727 |
Target: 5'- gUUGCUga-GGCcgGGGUCCAgGGGGACCc -3' miRNA: 3'- aGGCGGucgCCG--UCCAGGU-CCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 15678 | 0.66 | 0.640427 |
Target: 5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3' miRNA: 3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 15993 | 0.74 | 0.235435 |
Target: 5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3' miRNA: 3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 16035 | 0.67 | 0.535358 |
Target: 5'- aCC-CCGGCGGCuggccccgaggAGGcgCCAGgcgcGGGGCCg -3' miRNA: 3'- aGGcGGUCGCCG-----------UCCa-GGUC----CCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 16549 | 0.66 | 0.640427 |
Target: 5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3' miRNA: 3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 18366 | 0.67 | 0.544727 |
Target: 5'- gUUGCUga-GGCcgGGGUCCAgGGGGACCc -3' miRNA: 3'- aGGCGGucgCCG--UCCAGGU-CCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 18747 | 0.66 | 0.640427 |
Target: 5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3' miRNA: 3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 19062 | 0.74 | 0.235435 |
Target: 5'- gUCgGCuCGGCuGGCcgagacccGGGUCUGGGGGGCCu -3' miRNA: 3'- -AGgCG-GUCG-CCG--------UCCAGGUCCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 19104 | 0.67 | 0.535358 |
Target: 5'- aCC-CCGGCGGCuggccccgaggAGGcgCCAGgcgcGGGGCCg -3' miRNA: 3'- aGGcGGUCGCCG-----------UCCa-GGUC----CCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 19618 | 0.66 | 0.640427 |
Target: 5'- cCCuCCGGCuGGCcuGGUggacCCGGGGaGGCCa -3' miRNA: 3'- aGGcGGUCG-CCGu-CCA----GGUCCC-CUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 21435 | 0.67 | 0.544727 |
Target: 5'- gUUGCUga-GGCcgGGGUCCAgGGGGACCc -3' miRNA: 3'- aGGCGGucgCCG--UCCAGGU-CCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 21816 | 0.66 | 0.640427 |
Target: 5'- gCCGaCCGGCcccacuccgGGCgccuccucGGGgccagcugCCGGGGGGCCc -3' miRNA: 3'- aGGC-GGUCG---------CCG--------UCCa-------GGUCCCCUGG- -5' |
|||||||
33265 | 5' | -63.3 | NC_007605.1 | + | 22130 | 0.75 | 0.191038 |
Target: 5'- gUCgGCUGGCuGGCcgagacccGGGUCUGGGGGGCCu -3' miRNA: 3'- -AGgCGGUCG-CCG--------UCCAGGUCCCCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home