miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33265 5' -63.3 NC_007605.1 + 171610 0.66 0.608601
Target:  5'- cCCGCCccccuugggggcuuGGCuGGCGcGG-CCGGGGGcgcgACCg -3'
miRNA:   3'- aGGCGG--------------UCG-CCGU-CCaGGUCCCC----UGG- -5'
33265 5' -63.3 NC_007605.1 + 171333 0.75 0.194209
Target:  5'- cCCGCCGuagcgccgcucuguGCGGgGGGgCUGGGGGGCCg -3'
miRNA:   3'- aGGCGGU--------------CGCCgUCCaGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 171310 0.69 0.420176
Target:  5'- gUCUGgUGGgGGCGGGagCGGGGGGCg -3'
miRNA:   3'- -AGGCgGUCgCCGUCCagGUCCCCUGg -5'
33265 5' -63.3 NC_007605.1 + 171161 0.67 0.573129
Target:  5'- --gGCgGGCGGCggggggucgGGGUCCGcgggcuccGGGGGCUg -3'
miRNA:   3'- aggCGgUCGCCG---------UCCAGGU--------CCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 171072 0.66 0.608601
Target:  5'- cCCGCCccccuugggggcuuGGCuGGCGcGG-CCGGGGGcgcgACCg -3'
miRNA:   3'- aGGCGG--------------UCG-CCGU-CCaGGUCCCC----UGG- -5'
33265 5' -63.3 NC_007605.1 + 170796 0.75 0.194209
Target:  5'- cCCGCCGuagcgccgcucuguGCGGgGGGgCUGGGGGGCCg -3'
miRNA:   3'- aGGCGGU--------------CGCCgUCCaGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 170772 0.69 0.420176
Target:  5'- gUCUGgUGGgGGCGGGagCGGGGGGCg -3'
miRNA:   3'- -AGGCgGUCgCCGUCCagGUCCCCUGg -5'
33265 5' -63.3 NC_007605.1 + 170624 0.66 0.621131
Target:  5'- --gGCgGGCGGCGGGgggUCGGGGu-CCg -3'
miRNA:   3'- aggCGgUCGCCGUCCa--GGUCCCcuGG- -5'
33265 5' -63.3 NC_007605.1 + 170550 0.66 0.608601
Target:  5'- cCCGCCccccuugggggcuuGGCuGGCGcGG-CCGGGGGcgcgACCg -3'
miRNA:   3'- aGGCGG--------------UCG-CCGU-CCaGGUCCCC----UGG- -5'
33265 5' -63.3 NC_007605.1 + 170273 0.75 0.194209
Target:  5'- cCCGCCGuagcgccgcucuguGCGGgGGGgCUGGGGGGCCg -3'
miRNA:   3'- aGGCGGU--------------CGCCgUCCaGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 170250 0.69 0.420176
Target:  5'- gUCUGgUGGgGGCGGGagCGGGGGGCg -3'
miRNA:   3'- -AGGCgGUCgCCGUCCagGUCCCCUGg -5'
33265 5' -63.3 NC_007605.1 + 170101 0.67 0.573129
Target:  5'- --gGCgGGCGGCggggggucgGGGUCCGcgggcuccGGGGGCUg -3'
miRNA:   3'- aggCGgUCGCCG---------UCCAGGU--------CCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 170012 0.66 0.608601
Target:  5'- cCCGCCccccuugggggcuuGGCuGGCGcGG-CCGGGGGcgcgACCg -3'
miRNA:   3'- aGGCGG--------------UCG-CCGU-CCaGGUCCCC----UGG- -5'
33265 5' -63.3 NC_007605.1 + 169736 0.75 0.194209
Target:  5'- cCCGCCGuagcgccgcucuguGCGGgGGGgCUGGGGGGCCg -3'
miRNA:   3'- aGGCGGU--------------CGCCgUCCaGGUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 169712 0.69 0.420176
Target:  5'- gUCUGgUGGgGGCGGGagCGGGGGGCg -3'
miRNA:   3'- -AGGCgGUCgCCGUCCagGUCCCCUGg -5'
33265 5' -63.3 NC_007605.1 + 169564 0.67 0.573129
Target:  5'- --gGCgGGCGGCggggggucgGGGUCCGcgggcuccGGGGGCUg -3'
miRNA:   3'- aggCGgUCGCCG---------UCCAGGU--------CCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 169452 0.66 0.630779
Target:  5'- gUCGCU-GCGGCuugcuGGGgcaUGGGGGGCCg -3'
miRNA:   3'- aGGCGGuCGCCG-----UCCag-GUCCCCUGG- -5'
33265 5' -63.3 NC_007605.1 + 169237 0.66 0.601865
Target:  5'- gUCGUUGGCGGCAGG--CGGGaGGCCg -3'
miRNA:   3'- aGGCGGUCGCCGUCCagGUCCcCUGG- -5'
33265 5' -63.3 NC_007605.1 + 166643 0.66 0.630779
Target:  5'- aUCCaGCCAGUGGUcuacccGGUCCAuGGuGGCUu -3'
miRNA:   3'- -AGG-CGGUCGCCGu-----CCAGGUcCC-CUGG- -5'
33265 5' -63.3 NC_007605.1 + 166161 0.66 0.65007
Target:  5'- cCCGCCGG-GGCua----GGGGGACCc -3'
miRNA:   3'- aGGCGGUCgCCGuccaggUCCCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.