miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33376 3' -47.4 NC_007605.1 + 61340 0.66 0.999658
Target:  5'- --cGAGGCauacugCCGGUCCCUGa -3'
miRNA:   3'- agaUUCCGauca--GGCUAGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 15896 0.66 0.999658
Target:  5'- gUCUGggGGGCUGagggcgaccGUCCGggCCCgGa -3'
miRNA:   3'- -AGAU--UCCGAU---------CAGGCuaGGGgC- -5'
33376 3' -47.4 NC_007605.1 + 22034 0.66 0.999658
Target:  5'- gUCUGggGGGCUGagggcgaccGUCCGggCCCgGa -3'
miRNA:   3'- -AGAU--UCCGAU---------CAGGCuaGGGgC- -5'
33376 3' -47.4 NC_007605.1 + 31240 0.66 0.999658
Target:  5'- gUCUGggGGGCUGagggcgaccGUCCGggCCCgGa -3'
miRNA:   3'- -AGAU--UCCGAU---------CAGGCuaGGGgC- -5'
33376 3' -47.4 NC_007605.1 + 25103 0.66 0.999658
Target:  5'- gUCUGggGGGCUGagggcgaccGUCCGggCCCgGa -3'
miRNA:   3'- -AGAU--UCCGAU---------CAGGCuaGGGgC- -5'
33376 3' -47.4 NC_007605.1 + 12827 0.66 0.999658
Target:  5'- gUCUGggGGGCUGagggcgaccGUCCGggCCCgGa -3'
miRNA:   3'- -AGAU--UCCGAU---------CAGGCuaGGGgC- -5'
33376 3' -47.4 NC_007605.1 + 28171 0.66 0.999658
Target:  5'- gUCUGggGGGCUGagggcgaccGUCCGggCCCgGa -3'
miRNA:   3'- -AGAU--UCCGAU---------CAGGCuaGGGgC- -5'
33376 3' -47.4 NC_007605.1 + 34309 0.66 0.999658
Target:  5'- gUCUGggGGGCUGagggcgaccGUCCGggCCCgGa -3'
miRNA:   3'- -AGAU--UCCGAU---------CAGGCuaGGGgC- -5'
33376 3' -47.4 NC_007605.1 + 91941 0.66 0.999658
Target:  5'- --aGAGGCcAGggCCGAggCCCCGc -3'
miRNA:   3'- agaUUCCGaUCa-GGCUa-GGGGC- -5'
33376 3' -47.4 NC_007605.1 + 18965 0.66 0.999658
Target:  5'- gUCUGggGGGCUGagggcgaccGUCCGggCCCgGa -3'
miRNA:   3'- -AGAU--UCCGAU---------CAGGCuaGGGgC- -5'
33376 3' -47.4 NC_007605.1 + 130849 0.66 0.999567
Target:  5'- uUCgauuGGGCUGGUCUGAgcaaggugaUCUCUGa -3'
miRNA:   3'- -AGau--UCCGAUCAGGCU---------AGGGGC- -5'
33376 3' -47.4 NC_007605.1 + 47977 0.66 0.999455
Target:  5'- --aGGGGCUGGUCUGugaCCUGg -3'
miRNA:   3'- agaUUCCGAUCAGGCuagGGGC- -5'
33376 3' -47.4 NC_007605.1 + 15502 0.66 0.999455
Target:  5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3'
miRNA:   3'- -AGau--UCCGAUCaGGCUagGGGC- -5'
33376 3' -47.4 NC_007605.1 + 27778 0.66 0.999455
Target:  5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3'
miRNA:   3'- -AGau--UCCGAUCaGGCUagGGGC- -5'
33376 3' -47.4 NC_007605.1 + 24709 0.66 0.999455
Target:  5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3'
miRNA:   3'- -AGau--UCCGAUCaGGCUagGGGC- -5'
33376 3' -47.4 NC_007605.1 + 30847 0.66 0.999455
Target:  5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3'
miRNA:   3'- -AGau--UCCGAUCaGGCUagGGGC- -5'
33376 3' -47.4 NC_007605.1 + 21640 0.66 0.999455
Target:  5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3'
miRNA:   3'- -AGau--UCCGAUCaGGCUagGGGC- -5'
33376 3' -47.4 NC_007605.1 + 18571 0.66 0.999455
Target:  5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3'
miRNA:   3'- -AGau--UCCGAUCaGGCUagGGGC- -5'
33376 3' -47.4 NC_007605.1 + 12433 0.66 0.999455
Target:  5'- gUCggcuGGGCUGG-CCGAg-CCCGg -3'
miRNA:   3'- -AGau--UCCGAUCaGGCUagGGGC- -5'
33376 3' -47.4 NC_007605.1 + 99399 0.66 0.999443
Target:  5'- aCUGGGGCUGGUggccugggaggugCUGAggcccgUCCCCu -3'
miRNA:   3'- aGAUUCCGAUCA-------------GGCU------AGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.