miRNA display CGI


Results 61 - 80 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7639 3' -49.3 NC_001973.1 + 82911 0.66 0.99779
Target:  5'- cGCCGCgccCGACcGAcgcGUUCGGCGc -3'
miRNA:   3'- uCGGCGaa-GUUGuUUuuuCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 83305 0.68 0.990881
Target:  5'- gGGCgCGCUcgucgacugcaUCAACAGGGAGGC--GGCGc -3'
miRNA:   3'- -UCG-GCGA-----------AGUUGUUUUUUCGagCCGC- -5'
7639 3' -49.3 NC_001973.1 + 83461 0.73 0.895433
Target:  5'- cGCCGCgcucgUCGAgGAGGAGGUguggUCGGUGa -3'
miRNA:   3'- uCGGCGa----AGUUgUUUUUUCG----AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 83671 0.77 0.725816
Target:  5'- cGCuCGCUUCGACGAc-GAGCUCGcGCa -3'
miRNA:   3'- uCG-GCGAAGUUGUUuuUUCGAGC-CGc -5'
7639 3' -49.3 NC_001973.1 + 83818 0.67 0.994836
Target:  5'- gGGCCGCgcgCGGCG---GAGCUCGaaucggagagagaGCGg -3'
miRNA:   3'- -UCGGCGaa-GUUGUuuuUUCGAGC-------------CGC- -5'
7639 3' -49.3 NC_001973.1 + 85686 0.66 0.998443
Target:  5'- uGCUGUUguccUCAaaguccuuggcguGCAAAuaGAGGCUCGGCc -3'
miRNA:   3'- uCGGCGA----AGU-------------UGUUU--UUUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 86451 0.69 0.975663
Target:  5'- cGGCCGCggCGGCGGcGGAAGCgCGcGCGc -3'
miRNA:   3'- -UCGGCGaaGUUGUU-UUUUCGaGC-CGC- -5'
7639 3' -49.3 NC_001973.1 + 87555 0.69 0.982703
Target:  5'- aGGCCGCaUCGGCGguuccgccccacGAAcggguagucGAGCUCGGUc -3'
miRNA:   3'- -UCGGCGaAGUUGU------------UUU---------UUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 93720 0.67 0.994593
Target:  5'- aGGCCGCgaagcgcuaccgCGACGAGGcGAGCcgccCGGCGa -3'
miRNA:   3'- -UCGGCGaa----------GUUGUUUU-UUCGa---GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 95107 0.69 0.980553
Target:  5'- gGGCCGCgaCGACuuc-AAGCU-GGCGg -3'
miRNA:   3'- -UCGGCGaaGUUGuuuuUUCGAgCCGC- -5'
7639 3' -49.3 NC_001973.1 + 95743 0.74 0.873551
Target:  5'- gGGCgCGCccgcCGACAAGAucguGCUCGGCGu -3'
miRNA:   3'- -UCG-GCGaa--GUUGUUUUuu--CGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 98177 0.66 0.998158
Target:  5'- cGCCGU--CcACGAAAAA-CUCGGCGu -3'
miRNA:   3'- uCGGCGaaGuUGUUUUUUcGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 99754 0.66 0.99687
Target:  5'- gGGCgCGCgauugUCGAUuc----GCUCGGCGa -3'
miRNA:   3'- -UCG-GCGa----AGUUGuuuuuuCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 103910 0.72 0.915025
Target:  5'- cGCCGCggcgCGACGAGGAGcGCgucgucgCGGCGc -3'
miRNA:   3'- uCGGCGaa--GUUGUUUUUU-CGa------GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 104243 0.66 0.99779
Target:  5'- cGCUGCgcguccgUCAGCu-----GUUCGGCGg -3'
miRNA:   3'- uCGGCGa------AGUUGuuuuuuCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 104355 0.67 0.996303
Target:  5'- cGGCgGCggCGACGAucAAGCg-GGCGu -3'
miRNA:   3'- -UCGgCGaaGUUGUUuuUUCGagCCGC- -5'
7639 3' -49.3 NC_001973.1 + 105344 0.72 0.921032
Target:  5'- cGCCGUguuguucUCGACGAAgcggcgcgGAGGCgUCGGCGg -3'
miRNA:   3'- uCGGCGa------AGUUGUUU--------UUUCG-AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 106013 0.67 0.994078
Target:  5'- gGGCCGgUUCGcaucagacacgaAUAAAAcGGC-CGGCGg -3'
miRNA:   3'- -UCGGCgAAGU------------UGUUUUuUCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 106594 0.71 0.955697
Target:  5'- cGCCGCcgUCaAGCGAAcGAGCgcgacCGGCGu -3'
miRNA:   3'- uCGGCGa-AG-UUGUUUuUUCGa----GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 107429 0.68 0.988692
Target:  5'- -aCCGCUcuuuauauuuuuuacUgAACAAAAAacuuuugcAGCUCGGCGa -3'
miRNA:   3'- ucGGCGA---------------AgUUGUUUUU--------UCGAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.