miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7639 3' -49.3 NC_001973.1 + 55790 0.74 0.841056
Target:  5'- cGGCgCGCUUCGG-AAAAAcGCUCGGCu -3'
miRNA:   3'- -UCG-GCGAAGUUgUUUUUuCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 56374 0.73 0.902223
Target:  5'- cGCCGCgcUCGGCGcc-AGGCUCGGUa -3'
miRNA:   3'- uCGGCGa-AGUUGUuuuUUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 56446 0.68 0.988086
Target:  5'- cGCCaaGCUcgGGCGGGGcGGGCUCGGCGc -3'
miRNA:   3'- uCGG--CGAagUUGUUUU-UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 56500 0.68 0.988086
Target:  5'- cGCCaaGCUcgGGCGGGGcGGGCUCGGCGc -3'
miRNA:   3'- uCGG--CGAagUUGUUUU-UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 56527 0.68 0.99207
Target:  5'- nGCCaaGCUcgGGCGGGGcGGGCUCGGCGc -3'
miRNA:   3'- uCGG--CGAagUUGUUUU-UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 58467 0.7 0.959618
Target:  5'- uAGCCGCccgCugcCAAAcguGCUCGGCGg -3'
miRNA:   3'- -UCGGCGaa-Guu-GUUUuuuCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 61095 0.76 0.756552
Target:  5'- aGGCCGCgcggcCGACGGAGcAGCggCGGCGg -3'
miRNA:   3'- -UCGGCGaa---GUUGUUUUuUCGa-GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 61650 0.66 0.998158
Target:  5'- cGCCGCU---GCGAGAGcAGCU-GGCa -3'
miRNA:   3'- uCGGCGAaguUGUUUUU-UCGAgCCGc -5'
7639 3' -49.3 NC_001973.1 + 61677 0.68 0.99207
Target:  5'- cAGUCGCggC-GCGAAGcGGCgUCGGCGc -3'
miRNA:   3'- -UCGGCGaaGuUGUUUUuUCG-AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 62547 0.69 0.978209
Target:  5'- cGCCGacuaCUUCGACAucacccugugcGAGGGCUCGaGCGg -3'
miRNA:   3'- uCGGC----GAAGUUGUu----------UUUUCGAGC-CGC- -5'
7639 3' -49.3 NC_001973.1 + 62925 0.66 0.998158
Target:  5'- cGCCGaUUCGACuc--GGGC-CGGCGu -3'
miRNA:   3'- uCGGCgAAGUUGuuuuUUCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 63942 0.69 0.984669
Target:  5'- uGCCGCUgauccaUCAcCGGc--GGCUCGGCa -3'
miRNA:   3'- uCGGCGA------AGUuGUUuuuUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 68910 0.66 0.997364
Target:  5'- uGCCGCgaccacuaucUCAACGucAAGggcuucaucguGCUCGGCGu -3'
miRNA:   3'- uCGGCGa---------AGUUGUuuUUU-----------CGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 72096 0.66 0.997364
Target:  5'- uGCUGCcggUGACAucAucccuaacucGAGCUCGGCGg -3'
miRNA:   3'- uCGGCGaa-GUUGUuuU----------UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 73567 0.7 0.966729
Target:  5'- cGGCCcucCUUCGGCGAGAAGuacucGUUCGGCu -3'
miRNA:   3'- -UCGGc--GAAGUUGUUUUUU-----CGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 74194 0.69 0.982703
Target:  5'- cGCgGUUgauGCAAGucacGAGCUCGGCGu -3'
miRNA:   3'- uCGgCGAaguUGUUUu---UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 76451 0.71 0.941928
Target:  5'- cGCgCGCcUCGcCAAGGAcaugggcGGCUCGGCGg -3'
miRNA:   3'- uCG-GCGaAGUuGUUUUU-------UCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 81437 0.66 0.99779
Target:  5'- uGCU-CUUCuuCAAAuaauGCUCGGCGa -3'
miRNA:   3'- uCGGcGAAGuuGUUUuuu-CGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 81767 0.67 0.994593
Target:  5'- aGGCCGCgaUCAugucgc--GCUCGGCGc -3'
miRNA:   3'- -UCGGCGa-AGUuguuuuuuCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 81819 0.68 0.989556
Target:  5'- cGCCGCcggcggCGACGAGAcgacGAGCUCaGGuCGa -3'
miRNA:   3'- uCGGCGaa----GUUGUUUU----UUCGAG-CC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.