miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7639 3' -49.3 NC_001973.1 + 27896 0.67 0.994425
Target:  5'- cGCCGCgacucccguugcgCAACAAGcacgcGAGC-CGGCGa -3'
miRNA:   3'- uCGGCGaa-----------GUUGUUUu----UUCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 29949 0.67 0.994836
Target:  5'- -cCCGCcUCGagcccguACAGAGAcgccGGCUCGGUGg -3'
miRNA:   3'- ucGGCGaAGU-------UGUUUUU----UCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 30095 0.7 0.963294
Target:  5'- cAGCCGCUcaucUCGGCucGAAcuguucGGUUCGGCc -3'
miRNA:   3'- -UCGGCGA----AGUUGuuUUU------UCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 31383 0.66 0.997364
Target:  5'- cGCCaGCgaCGGCAGAAAAcuGCUCGuGCu -3'
miRNA:   3'- uCGG-CGaaGUUGUUUUUU--CGAGC-CGc -5'
7639 3' -49.3 NC_001973.1 + 32397 0.66 0.99687
Target:  5'- gGGCUGCUccaCGGCGAc--AGCcCGGCGa -3'
miRNA:   3'- -UCGGCGAa--GUUGUUuuuUCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 32558 0.7 0.966729
Target:  5'- cGCCGCcgcCGACGccgccgucGGCUCGGCGc -3'
miRNA:   3'- uCGGCGaa-GUUGUuuuu----UCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 38945 0.74 0.841056
Target:  5'- -aCCGUUUCAaugaccGCGAAGAGGC-CGGCGa -3'
miRNA:   3'- ucGGCGAAGU------UGUUUUUUCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 39247 0.71 0.947097
Target:  5'- uGGCCGCUUUggUuuuGAGGGCgucgccgucgCGGCGc -3'
miRNA:   3'- -UCGGCGAAGuuGuu-UUUUCGa---------GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 40022 0.68 0.988086
Target:  5'- aGGCCGaacUCGcgcuGCAGccuGAGCUCGGUGu -3'
miRNA:   3'- -UCGGCga-AGU----UGUUuu-UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 41146 0.69 0.984669
Target:  5'- cGGCgGCggUCAGCGggcGAGAGGCuUCGGUc -3'
miRNA:   3'- -UCGgCGa-AGUUGU---UUUUUCG-AGCCGc -5'
7639 3' -49.3 NC_001973.1 + 41417 0.67 0.996303
Target:  5'- cGCCGCcuccgcgUCGGCcGAcAGGCUcCGGUGa -3'
miRNA:   3'- uCGGCGa------AGUUGuUUuUUCGA-GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 43709 0.67 0.996303
Target:  5'- cGGCagCGCUUCggUGAGGAAGCgcugcucgaUGGCGa -3'
miRNA:   3'- -UCG--GCGAAGuuGUUUUUUCGa--------GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 44596 0.76 0.776451
Target:  5'- cGCgGCggCGGCGAGcgGGCUCGGCc -3'
miRNA:   3'- uCGgCGaaGUUGUUUuuUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 47749 0.68 0.988086
Target:  5'- cGGCCGCc-CGGCGGAAucacGGCcuccUCGGCGc -3'
miRNA:   3'- -UCGGCGaaGUUGUUUUu---UCG----AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 49797 0.69 0.980553
Target:  5'- gAGgCGCUaCGuGCAGAGccagaagcgcAAGCUCGGCGu -3'
miRNA:   3'- -UCgGCGAaGU-UGUUUU----------UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 51452 0.69 0.975663
Target:  5'- aGGCCGCgagccCGGGcGAGCUCGaGCGg -3'
miRNA:   3'- -UCGGCGaaguuGUUUuUUCGAGC-CGC- -5'
7639 3' -49.3 NC_001973.1 + 52717 0.7 0.972907
Target:  5'- gAGCCGCcgCAGCuc--GAGCgccaggCGGCGc -3'
miRNA:   3'- -UCGGCGaaGUUGuuuuUUCGa-----GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 53817 0.75 0.802391
Target:  5'- gAGCCGCUgcagcuggucguagUCGACGAccGAGCUcgcccCGGCGg -3'
miRNA:   3'- -UCGGCGA--------------AGUUGUUuuUUCGA-----GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 54424 0.66 0.997542
Target:  5'- cAGCCGCUugacgcUCAAUAuuuucaccauGCUgGGCGu -3'
miRNA:   3'- -UCGGCGA------AGUUGUuuuuu-----CGAgCCGC- -5'
7639 3' -49.3 NC_001973.1 + 55560 0.67 0.994078
Target:  5'- cAGCgGCUUCAGCAuaucguAAAAGCgcaCGucGCGa -3'
miRNA:   3'- -UCGgCGAAGUUGUu-----UUUUCGa--GC--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.