miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7639 3' -49.3 NC_001973.1 + 61650 0.66 0.998158
Target:  5'- cGCCGCU---GCGAGAGcAGCU-GGCa -3'
miRNA:   3'- uCGGCGAaguUGUUUUU-UCGAgCCGc -5'
7639 3' -49.3 NC_001973.1 + 17546 0.66 0.998158
Target:  5'- cGGCCGCguugaccgUCAACAGcgu-GCacauggaaUCGGCGc -3'
miRNA:   3'- -UCGGCGa-------AGUUGUUuuuuCG--------AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 98177 0.66 0.998158
Target:  5'- cGCCGU--CcACGAAAAA-CUCGGCGu -3'
miRNA:   3'- uCGGCGaaGuUGUUUUUUcGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 62925 0.66 0.998158
Target:  5'- cGCCGaUUCGACuc--GGGC-CGGCGu -3'
miRNA:   3'- uCGGCgAAGUUGuuuuUUCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 85686 0.66 0.998443
Target:  5'- uGCUGUUguccUCAaaguccuuggcguGCAAAuaGAGGCUCGGCc -3'
miRNA:   3'- uCGGCGA----AGU-------------UGUUU--UUUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 158494 0.66 0.99687
Target:  5'- gAGCCGaUUCGACAAGAAacuccgaccGGCUUGuuuGCGc -3'
miRNA:   3'- -UCGGCgAAGUUGUUUUU---------UCGAGC---CGC- -5'
7639 3' -49.3 NC_001973.1 + 158452 0.66 0.99687
Target:  5'- gAGCCGgcUCGuCAAGAAAGUccgaUCGGCu -3'
miRNA:   3'- -UCGGCgaAGUuGUUUUUUCG----AGCCGc -5'
7639 3' -49.3 NC_001973.1 + 109147 0.67 0.994915
Target:  5'- cGCCGCcUCGACGAGccgggcGAGC-CGGUc -3'
miRNA:   3'- uCGGCGaAGUUGUUUu-----UUCGaGCCGc -5'
7639 3' -49.3 NC_001973.1 + 160675 0.67 0.994915
Target:  5'- aAGCCgaugagaucauGCcUUAACuc--GAGCUCGGCGg -3'
miRNA:   3'- -UCGG-----------CGaAGUUGuuuuUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 1837 0.67 0.995654
Target:  5'- cGGCCagGCUgUGGCAcagguugggguuGGAGGGCUUGGCGa -3'
miRNA:   3'- -UCGG--CGAaGUUGU------------UUUUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 133279 0.67 0.995654
Target:  5'- cGGCCGCggc--CGAGAAcgcGGC-CGGCGg -3'
miRNA:   3'- -UCGGCGaaguuGUUUUU---UCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 136860 0.67 0.995654
Target:  5'- cAGCCGCggauaCAGCuggcGGAGCUCGaCGg -3'
miRNA:   3'- -UCGGCGaa---GUUGuuu-UUUCGAGCcGC- -5'
7639 3' -49.3 NC_001973.1 + 41417 0.67 0.996303
Target:  5'- cGCCGCcuccgcgUCGGCcGAcAGGCUcCGGUGa -3'
miRNA:   3'- uCGGCGa------AGUUGuUUuUUCGA-GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 21144 0.67 0.996303
Target:  5'- gAGaucaUGCUUC-GCuc--GAGCUCGGCGg -3'
miRNA:   3'- -UCg---GCGAAGuUGuuuuUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 133659 0.67 0.996303
Target:  5'- cAGCCGCcgUUGAUGAGcGAGCgcccgaacCGGCGa -3'
miRNA:   3'- -UCGGCGa-AGUUGUUUuUUCGa-------GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 43709 0.67 0.996303
Target:  5'- cGGCagCGCUUCggUGAGGAAGCgcugcucgaUGGCGa -3'
miRNA:   3'- -UCG--GCGAAGuuGUUUUUUCGa--------GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 104355 0.67 0.996303
Target:  5'- cGGCgGCggCGACGAucAAGCg-GGCGu -3'
miRNA:   3'- -UCGgCGaaGUUGUUuuUUCGagCCGC- -5'
7639 3' -49.3 NC_001973.1 + 12401 0.66 0.99687
Target:  5'- aAGCCGaugagaUCAuuccCAAAcuuGAGCUCGGCu -3'
miRNA:   3'- -UCGGCga----AGUu---GUUUu--UUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 32397 0.66 0.99687
Target:  5'- gGGCUGCUccaCGGCGAc--AGCcCGGCGa -3'
miRNA:   3'- -UCGGCGAa--GUUGUUuuuUCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 99754 0.66 0.99687
Target:  5'- gGGCgCGCgauugUCGAUuc----GCUCGGCGa -3'
miRNA:   3'- -UCG-GCGa----AGUUGuuuuuuCGAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.