miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
944 5' -56.1 NC_000899.1 + 200 0.66 0.5559
Target:  5'- aAUUGCGCCggcACAGUC-CCAa-UGGCu -3'
miRNA:   3'- -UAACGCGGau-UGUCGGuGGUccACCG- -5'
944 5' -56.1 NC_000899.1 + 4832 0.66 0.54484
Target:  5'- -gUGCGCCcu-CA-CCAUCAaacGGUGGCu -3'
miRNA:   3'- uaACGCGGauuGUcGGUGGU---CCACCG- -5'
944 5' -56.1 NC_000899.1 + 10777 0.67 0.490769
Target:  5'- ---cCGCCUgcgGAC-GCCACUGGGUGcGCa -3'
miRNA:   3'- uaacGCGGA---UUGuCGGUGGUCCAC-CG- -5'
944 5' -56.1 NC_000899.1 + 39459 0.68 0.459542
Target:  5'- --gGCgGCCcu-CGGCCGCCAGG-GGg -3'
miRNA:   3'- uaaCG-CGGauuGUCGGUGGUCCaCCg -5'
944 5' -56.1 NC_000899.1 + 39324 0.68 0.459542
Target:  5'- --gGCgGCCcu-CGGCCGCCAGG-GGg -3'
miRNA:   3'- uaaCG-CGGauuGUCGGUGGUCCaCCg -5'
944 5' -56.1 NC_000899.1 + 40133 0.68 0.459542
Target:  5'- --gGCgGCCcu-CGGCCGCCAGG-GGg -3'
miRNA:   3'- uaaCG-CGGauuGUCGGUGGUCCaCCg -5'
944 5' -56.1 NC_000899.1 + 40094 0.68 0.459542
Target:  5'- --aGUGUCUGucucCGGCCGgCAGG-GGCg -3'
miRNA:   3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5'
944 5' -56.1 NC_000899.1 + 40538 0.68 0.459542
Target:  5'- --gGCgGCCcu-CGGCCGCCAGG-GGg -3'
miRNA:   3'- uaaCG-CGGauuGUCGGUGGUCCaCCg -5'
944 5' -56.1 NC_000899.1 + 40403 0.68 0.459542
Target:  5'- --gGCgGCCcu-CGGCCGCCAGG-GGg -3'
miRNA:   3'- uaaCG-CGGauuGUCGGUGGUCCaCCg -5'
944 5' -56.1 NC_000899.1 + 38920 0.68 0.459542
Target:  5'- --gGCgGCCcu-CGGCCGCCAGG-GGg -3'
miRNA:   3'- uaaCG-CGGauuGUCGGUGGUCCaCCg -5'
944 5' -56.1 NC_000899.1 + 39055 0.68 0.459542
Target:  5'- --gGCgGCCcu-CGGCCGCCAGG-GGg -3'
miRNA:   3'- uaaCG-CGGauuGUCGGUGGUCCaCCg -5'
944 5' -56.1 NC_000899.1 + 39729 0.68 0.459542
Target:  5'- --gGCgGCCcu-CGGCCGCCAGG-GGg -3'
miRNA:   3'- uaaCG-CGGauuGUCGGUGGUCCaCCg -5'
944 5' -56.1 NC_000899.1 + 39999 0.68 0.459542
Target:  5'- --gGCgGCCcu-CGGCCGCCAGG-GGg -3'
miRNA:   3'- uaaCG-CGGauuGUCGGUGGUCCaCCg -5'
944 5' -56.1 NC_000899.1 + 39864 0.68 0.459542
Target:  5'- --gGCgGCCcu-CGGCCGCCAGG-GGg -3'
miRNA:   3'- uaaCG-CGGauuGUCGGUGGUCCaCCg -5'
944 5' -56.1 NC_000899.1 + 39594 0.68 0.459542
Target:  5'- --gGCgGCCcu-CGGCCGCCAGG-GGg -3'
miRNA:   3'- uaaCG-CGGauuGUCGGUGGUCCaCCg -5'
944 5' -56.1 NC_000899.1 + 39189 0.68 0.459542
Target:  5'- --gGCgGCCcu-CGGCCGCCAGG-GGg -3'
miRNA:   3'- uaaCG-CGGauuGUCGGUGGUCCaCCg -5'
944 5' -56.1 NC_000899.1 + 40268 0.68 0.459542
Target:  5'- --gGCgGCCcu-CGGCCGCCAGG-GGg -3'
miRNA:   3'- uaaCG-CGGauuGUCGGUGGUCCaCCg -5'
944 5' -56.1 NC_000899.1 + 39150 0.68 0.44937
Target:  5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3'
miRNA:   3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5'
944 5' -56.1 NC_000899.1 + 40364 0.68 0.44937
Target:  5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3'
miRNA:   3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5'
944 5' -56.1 NC_000899.1 + 39285 0.68 0.44937
Target:  5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3'
miRNA:   3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.