miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9936 3' -61.3 NC_002641.1 + 125389 0.66 0.713266
Target:  5'- cCUGCGCgccguuagcgagcgGCGGCAcgcaggCAGCguuguCGGCGCUGc -3'
miRNA:   3'- aGACGCG--------------CGCCGUa-----GUCG-----GCUGCGGC- -5'
9936 3' -61.3 NC_002641.1 + 157083 0.66 0.713266
Target:  5'- cCUGCGCgccguuagcgagcgGCGGCAcgcaggCAGCguuguCGGCGCUGc -3'
miRNA:   3'- aGACGCG--------------CGCCGUa-----GUCG-----GCUGCGGC- -5'
9936 3' -61.3 NC_002641.1 + 145917 0.66 0.696887
Target:  5'- --cGCGgacguccaCGCGGCAgccgUCGguacgcGCCGACGCCa -3'
miRNA:   3'- agaCGC--------GCGCCGU----AGU------CGGCUGCGGc -5'
9936 3' -61.3 NC_002641.1 + 136556 0.66 0.696887
Target:  5'- --cGCGgacguccaCGCGGCAgccgUCGguacgcGCCGACGCCa -3'
miRNA:   3'- agaCGC--------GCGCCGU----AGU------CGGCUGCGGc -5'
9936 3' -61.3 NC_002641.1 + 125073 0.66 0.677436
Target:  5'- --cGUGCGCGGCGcuggUAGCCcuGGcCGCCa -3'
miRNA:   3'- agaCGCGCGCCGUa---GUCGG--CU-GCGGc -5'
9936 3' -61.3 NC_002641.1 + 157400 0.66 0.677436
Target:  5'- --cGUGCGCGGCGcuggUAGCCcuGGcCGCCa -3'
miRNA:   3'- agaCGCGCGCCGUa---GUCGG--CU-GCGGc -5'
9936 3' -61.3 NC_002641.1 + 49161 0.66 0.667654
Target:  5'- aUCUGC-CGCaGCGUCcgcaaguucggcGGCCGAUGCa- -3'
miRNA:   3'- -AGACGcGCGcCGUAG------------UCGGCUGCGgc -5'
9936 3' -61.3 NC_002641.1 + 125442 0.67 0.608665
Target:  5'- gCUGCG-GCGaGCggCGGCCGA-GCUGg -3'
miRNA:   3'- aGACGCgCGC-CGuaGUCGGCUgCGGC- -5'
9936 3' -61.3 NC_002641.1 + 157030 0.67 0.608665
Target:  5'- gCUGCG-GCGaGCggCGGCCGA-GCUGg -3'
miRNA:   3'- aGACGCgCGC-CGuaGUCGGCUgCGGC- -5'
9936 3' -61.3 NC_002641.1 + 125488 0.69 0.531117
Target:  5'- aCUGC-UGCGGCAaggaagGGCCGcCGCCGa -3'
miRNA:   3'- aGACGcGCGCCGUag----UCGGCuGCGGC- -5'
9936 3' -61.3 NC_002641.1 + 156984 0.69 0.531117
Target:  5'- aCUGC-UGCGGCAaggaagGGCCGcCGCCGa -3'
miRNA:   3'- aGACGcGCGCCGUag----UCGGCuGCGGC- -5'
9936 3' -61.3 NC_002641.1 + 47803 0.7 0.431235
Target:  5'- aUCUGCGCGUcgauGGCAUU-GCCGAgaagacCGCCc -3'
miRNA:   3'- -AGACGCGCG----CCGUAGuCGGCU------GCGGc -5'
9936 3' -61.3 NC_002641.1 + 5654 0.72 0.358228
Target:  5'- aUCaGCGCGCGGCG--GGCCGACcgGCuCGa -3'
miRNA:   3'- -AGaCGCGCGCCGUagUCGGCUG--CG-GC- -5'
9936 3' -61.3 NC_002641.1 + 118068 0.72 0.358228
Target:  5'- aUCaGCGCGCGGCG--GGCCGACcgGCuCGa -3'
miRNA:   3'- -AGaCGCGCGCCGUagUCGGCUG--CG-GC- -5'
9936 3' -61.3 NC_002641.1 + 56236 0.93 0.013235
Target:  5'- -gUGCGCGCGGCGUCGGCUGAUGCCGc -3'
miRNA:   3'- agACGCGCGCCGUAGUCGGCUGCGGC- -5'
9936 3' -61.3 NC_002641.1 + 56044 1.08 0.001264
Target:  5'- gUCUGCGCGCGGCAUCAGCCGACGCCGc -3'
miRNA:   3'- -AGACGCGCGCCGUAGUCGGCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.