miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18640469 NC_003390.1 Cyanophage P60

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13062 - 11157 88 24 -22.4 NP_570324 5' arm      3' arm
13061 - 10749 86 20 -20.8 5' arm      3' arm
13060 - 9595 88 20.5 -27.6 NP_570322 5' arm      3' arm
13059 - 8322 89 20 -21.92 NP_570321 5' arm      3' arm
13058 - 7460 87 20 -25.82 5' arm      3' arm
13057 - 7183 90 24 -26.6 NP_570319 5' arm      3' arm
13056 - 7037 90 22 -19.7 NP_570319 5' arm      3' arm
13055 - 6867 87 19 -23.1 NP_570319 5' arm      3' arm
13054 - 3976 87 21 -23.1 NP_570316 5' arm      3' arm
13053 - 3561 89 20 -24.5 NP_570316 5' arm      3' arm
13052 - 2499 88 20 -21 5' arm      3' arm
13051 - 1141 84 21.5 -27 NP_570313 5' arm      3' arm
13050 - 346 89 19 -21.6 5' arm      3' arm
13049 + 46631 89 19 -20.7 5' arm      3' arm
13048 + 44225 90 20 -25.8 NP_570385 5' arm      3' arm
13047 + 42552 89 21 -23.1 NP_570379 5' arm      3' arm
13046 + 39465 86 21 -20.6 NP_570370 5' arm      3' arm
13045 + 38801 86 20.5 -19.9 NP_570369 5' arm      3' arm
13044 + 38305 88 23 -22.5 NP_570367 5' arm      3' arm
13043 + 37912 86 21 -22.1 NP_570367 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.