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| GenBank Identifier | RefSeq Acc. | Name |
| 18653809 | NC_003401.1 | Cercopithecine herpesvirus 17 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 13227 | - | 78238 | 84 | 19.5 | -22.4 | NP_570797 | 5' arm 3' arm | ||
| 13159 | + | 120801 | 83 | 19.5 | -20.4 | 5' arm 3' arm | |||
| 13131 | + | 62041 | 90 | 19.5 | -20.2 | NP_570785 | 5' arm 3' arm | ||
| 13158 | + | 119809 | 90 | 19.5 | -21.7 | NP_570819 | 5' arm 3' arm | ||
| 13213 | - | 41847 | 90 | 19.5 | -21.2 | NP_570765 | 5' arm 3' arm | ||
| 13101 | + | 13004 | 90 | 19.5 | -24.1 | NP_570749 | 5' arm 3' arm | ||
| 13141 | + | 93077 | 90 | 19.5 | -26.8 | NP_570808 | 5' arm 3' arm | ||
| 13194 | - | 15747 | 88 | 19.5 | -23.9 | NP_570750 | 5' arm 3' arm | ||
| 13235 | - | 100113 | 88 | 19.5 | -21.4 | NP_570812 | 5' arm 3' arm | ||
| 13143 | + | 101087 | 85 | 20 | -25 | NP_570812 | 5' arm 3' arm | ||
| 13188 | - | 12889 | 86 | 20 | -23.9 | NP_570749 | 5' arm 3' arm | ||
| 13140 | + | 92248 | 89 | 20 | -21.1 | NP_570807 | 5' arm 3' arm | ||
| 13113 | + | 27303 | 90 | 20 | -23.5 | NP_570756 | 5' arm 3' arm | ||
| 13171 | + | 128482 | 88 | 20 | -27.7 | NP_570823 | 5' arm 3' arm | ||
| 13267 | - | 119721 | 89 | 20 | -19.8 | NP_570818 | 5' arm 3' arm | ||
| 13197 | - | 17307 | 89 | 20 | -20.3 | 5' arm 3' arm | |||
| 13201 | - | 18861 | 89 | 20 | -26.5 | 5' arm 3' arm | |||
| 13108 | + | 20857 | 88 | 20 | -28.6 | NP_570754 | 5' arm 3' arm | ||
| 13117 | + | 28675 | 90 | 20 | -19.6 | NP_570757 | 5' arm 3' arm | ||
| 13142 | + | 93464 | 90 | 20 | -20.9 | NP_570808 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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