miRNA display CGI


Results 1 - 20 of 30 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 2864 0.7 0.949869
Target:  5'- uGCUCCGGGGCcgguggcGGUCuGGUa- -3'
miRNA:   3'- uUGAGGCCCCGa------CUAGuCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 + 5315 0.71 0.934869
Target:  5'- -cCUCCGGGGCUGcguccugccuuGUUGGGUg- -3'
miRNA:   3'- uuGAGGCCCCGAC-----------UAGUCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 13134 0.67 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 16202 0.67 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 19271 0.67 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 22340 0.67 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 25409 0.67 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 28478 0.67 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 31547 0.67 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 34616 0.67 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 41626 1.02 0.026909
Target:  5'- cAACUCCGGGGCUGAUCAGGUUAa -3'
miRNA:   3'- -UUGAGGCCCCGACUAGUCCAAU- -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 + 52961 0.66 0.99439
Target:  5'- uAGCUUgGGGGCguccggcuggGGUCAGGg-- -3'
miRNA:   3'- -UUGAGgCCCCGa---------CUAGUCCaau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 + 55698 0.7 0.949869
Target:  5'- uGGCUUCGGGGUUG-UCGuGGUUGg -3'
miRNA:   3'- -UUGAGGCCCCGACuAGU-CCAAU- -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 56653 0.67 0.989825
Target:  5'- uGCUCuCGGGcGgaGAUCAGGa-- -3'
miRNA:   3'- uUGAG-GCCC-CgaCUAGUCCaau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 63548 0.66 0.996587
Target:  5'- -gUUgCGGGGCUGucguacagCAGGUUGg -3'
miRNA:   3'- uuGAgGCCCCGACua------GUCCAAU- -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 82749 0.68 0.980528
Target:  5'- cACUCgGGGGCcUGAgggCAGGg-- -3'
miRNA:   3'- uUGAGgCCCCG-ACUa--GUCCaau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 84832 0.69 0.972521
Target:  5'- cAGC-CCGGGGCUGuUguGGUa- -3'
miRNA:   3'- -UUGaGGCCCCGACuAguCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 + 91341 0.69 0.972521
Target:  5'- gGGCaCCGGGGCUGGcgUUAGGg-- -3'
miRNA:   3'- -UUGaGGCCCCGACU--AGUCCaau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 + 91853 0.69 0.975416
Target:  5'- gGGCUUCaGGGGCaUGGUCGGGc-- -3'
miRNA:   3'- -UUGAGG-CCCCG-ACUAGUCCaau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 + 93158 0.67 0.989825
Target:  5'- aGACUCUGGGccCUGAUUAGGa-- -3'
miRNA:   3'- -UUGAGGCCCc-GACUAGUCCaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.