miRNA display CGI


Results 1 - 20 of 30 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 63548 0.66 0.996587
Target:  5'- -gUUgCGGGGCUGucguacagCAGGUUGg -3'
miRNA:   3'- uuGAgGCCCCGACua------GUCCAAU- -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 + 171188 0.66 0.996587
Target:  5'- gGGCUCCGGGGgCUG--CGGGc-- -3'
miRNA:   3'- -UUGAGGCCCC-GACuaGUCCaau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 + 170128 0.66 0.996587
Target:  5'- gGGCUCCGGGGgCUG--CGGGc-- -3'
miRNA:   3'- -UUGAGGCCCC-GACuaGUCCaau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 + 169591 0.66 0.996587
Target:  5'- gGGCUCCGGGGgCUG--CGGGc-- -3'
miRNA:   3'- -UUGAGGCCCC-GACuaGUCCaau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 + 125704 0.66 0.997137
Target:  5'- cACUCCGGGa--GAUCAGGa-- -3'
miRNA:   3'- uUGAGGCCCcgaCUAGUCCaau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 + 52961 0.66 0.99439
Target:  5'- uAGCUUgGGGGCguccggcuggGGUCAGGg-- -3'
miRNA:   3'- -UUGAGgCCCCGa---------CUAGUCCaau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 122599 0.66 0.995222
Target:  5'- ---aCCGuGGGCaUGAUCAGGg-- -3'
miRNA:   3'- uugaGGC-CCCG-ACUAGUCCaau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 22340 0.67 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 25409 0.67 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 19271 0.67 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 28478 0.67 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 31547 0.67 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 16202 0.67 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 13134 0.67 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 56653 0.67 0.989825
Target:  5'- uGCUCuCGGGcGgaGAUCAGGa-- -3'
miRNA:   3'- uUGAG-GCCC-CgaCUAGUCCaau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 + 93158 0.67 0.989825
Target:  5'- aGACUCUGGGccCUGAUUAGGa-- -3'
miRNA:   3'- -UUGAGGCCCc-GACUAGUCCaau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 152422 0.67 0.993445
Target:  5'- uGCUCUGGGuGCUGGgaaaaaugauUCAGGa-- -3'
miRNA:   3'- uUGAGGCCC-CGACU----------AGUCCaau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 34616 0.67 0.993445
Target:  5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3'
miRNA:   3'- -UUGAGGCCCC-GACUag-----UCCAau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 - 82749 0.68 0.980528
Target:  5'- cACUCgGGGGCcUGAgggCAGGg-- -3'
miRNA:   3'- uUGAGgCCCCG-ACUa--GUCCaau -5'
MIMAT0000995 ebv-miR-BHRF1-1 -48.6 NC_007605.1 + 91853 0.69 0.975416
Target:  5'- gGGCUUCaGGGGCaUGGUCGGGc-- -3'
miRNA:   3'- -UUGAGG-CCCCG-ACUAGUCCaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.