Results 21 - 30 of 30 are showing below:
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| Acc. No. | Name | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 34616 | 0.67 | 0.993445 |
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Target: 5'- gGACUCUGGGGcCUGGgccccgaGGGUg- -3' miRNA: 3'- -UUGAGGCCCC-GACUag-----UCCAau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 41626 | 1.02 | 0.026909 |
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Target: 5'- cAACUCCGGGGCUGAUCAGGUUAa -3' miRNA: 3'- -UUGAGGCCCCGACUAGUCCAAU- -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 56653 | 0.67 | 0.989825 |
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Target: 5'- uGCUCuCGGGcGgaGAUCAGGa-- -3' miRNA: 3'- uUGAG-GCCC-CgaCUAGUCCaau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 63548 | 0.66 | 0.996587 |
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Target: 5'- -gUUgCGGGGCUGucguacagCAGGUUGg -3' miRNA: 3'- uuGAgGCCCCGACua------GUCCAAU- -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 82749 | 0.68 | 0.980528 |
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Target: 5'- cACUCgGGGGCcUGAgggCAGGg-- -3' miRNA: 3'- uUGAGgCCCCG-ACUa--GUCCaau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 84832 | 0.69 | 0.972521 |
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Target: 5'- cAGC-CCGGGGCUGuUguGGUa- -3' miRNA: 3'- -UUGaGGCCCCGACuAguCCAau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 102150 | 0.75 | 0.762907 |
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Target: 5'- aGACUCCGGGGUUGcggAGGUUGg -3' miRNA: 3'- -UUGAGGCCCCGACuagUCCAAU- -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 116400 | 0.72 | 0.906868 |
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Target: 5'- -uCUCCGGGGUcagcgaggcccucuuUGAUCAGGa-- -3' miRNA: 3'- uuGAGGCCCCG---------------ACUAGUCCaau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 122599 | 0.66 | 0.995222 |
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Target: 5'- ---aCCGuGGGCaUGAUCAGGg-- -3' miRNA: 3'- uugaGGC-CCCG-ACUAGUCCaau -5' |
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| MIMAT0000995 | ebv-miR-BHRF1-1 | -48.6 | NC_007605.1 | - | 152422 | 0.67 | 0.993445 |
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Target: 5'- uGCUCUGGGuGCUGGgaaaaaugauUCAGGa-- -3' miRNA: 3'- uUGAGGCCC-CGACU----------AGUCCaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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