Results 1 - 20 of 45 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 127894 | 0.66 | 1 |
Target: 5'- gGCGGGGuGCucuGAUGCGGAAAAg- -3' miRNA: 3'- -CGUUCC-CGc--UUACGUCUUUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 169688 | 0.66 | 1 |
Target: 5'- -aGGGGGCaGggUcGCAGggGGUGu -3' miRNA: 3'- cgUUCCCG-CuuA-CGUCuuUUAU- -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 170748 | 0.66 | 1 |
Target: 5'- -aGGGGGCaGggUcGCAGggGGUGu -3' miRNA: 3'- cgUUCCCG-CuuA-CGUCuuUUAU- -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 170226 | 0.66 | 1 |
Target: 5'- -aGGGGGCaGggUcGCAGggGGUGu -3' miRNA: 3'- cgUUCCCG-CuuA-CGUCuuUUAU- -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 171286 | 0.66 | 1 |
Target: 5'- -aGGGGGCaGggUcGCAGggGGUGu -3' miRNA: 3'- cgUUCCCG-CuuA-CGUCuuUUAU- -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 40160 | 0.66 | 0.999999 |
Target: 5'- gGCAGGGGgGGggGCAGuGAGg- -3' miRNA: 3'- -CGUUCCCgCUuaCGUCuUUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 86210 | 0.66 | 0.999999 |
Target: 5'- cGCAucaGGCGAagGCGGAGAAg- -3' miRNA: 3'- -CGUuc-CCGCUuaCGUCUUUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 98532 | 0.67 | 0.999998 |
Target: 5'- uGUggGGuGCGAagGCGGGAGAc- -3' miRNA: 3'- -CGuuCC-CGCUuaCGUCUUUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 22849 | 0.67 | 0.999996 |
Target: 5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3' miRNA: 3'- -CGUU-----CCCGCUuACGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 19780 | 0.67 | 0.999996 |
Target: 5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3' miRNA: 3'- -CGUU-----CCCGCUuACGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 108443 | 0.67 | 0.999996 |
Target: 5'- -uGGGGuGCGggUGCGGguGAUGg -3' miRNA: 3'- cgUUCC-CGCuuACGUCuuUUAU- -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 32056 | 0.67 | 0.999996 |
Target: 5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3' miRNA: 3'- -CGUU-----CCCGCUuACGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 13642 | 0.67 | 0.999996 |
Target: 5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3' miRNA: 3'- -CGUU-----CCCGCUuACGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 105357 | 0.67 | 0.999996 |
Target: 5'- aCGGGGGCGccccugGCAGAGAGg- -3' miRNA: 3'- cGUUCCCGCuua---CGUCUUUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 25918 | 0.67 | 0.999996 |
Target: 5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3' miRNA: 3'- -CGUU-----CCCGCUuACGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 35124 | 0.67 | 0.999996 |
Target: 5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3' miRNA: 3'- -CGUU-----CCCGCUuACGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 28987 | 0.67 | 0.999996 |
Target: 5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3' miRNA: 3'- -CGUU-----CCCGCUuACGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 16711 | 0.67 | 0.999996 |
Target: 5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3' miRNA: 3'- -CGUU-----CCCGCUuACGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 57813 | 0.67 | 0.999996 |
Target: 5'- -gGGGGGCGAugggGCGGAAcGUGg -3' miRNA: 3'- cgUUCCCGCUua--CGUCUUuUAU- -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 57881 | 0.67 | 0.999994 |
Target: 5'- -aGGGGGCGGcgGCcGGAGGUGg -3' miRNA: 3'- cgUUCCCGCUuaCGuCUUUUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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