Results 1 - 20 of 45 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 152788 | 1.02 | 0.094377 |
Target: 5'- cGCAAGGGCGAAUGCAGAAAAUAg -3' miRNA: 3'- -CGUUCCCGCUUACGUCUUUUAU- -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 148971 | 0.74 | 0.99216 |
Target: 5'- cGCAGGGGCgccgaaagcagGAAUGCGGGGAGc- -3' miRNA: 3'- -CGUUCCCG-----------CUUACGUCUUUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 72288 | 0.74 | 0.99216 |
Target: 5'- aGCGAGGGCcaGAUGCAGGAGc-- -3' miRNA: 3'- -CGUUCCCGc-UUACGUCUUUuau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 61445 | 0.74 | 0.990849 |
Target: 5'- gGCGGGGGCGGcgGCGGGc---- -3' miRNA: 3'- -CGUUCCCGCUuaCGUCUuuuau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 62319 | 0.72 | 0.99772 |
Target: 5'- aGUggGGGCGGGgccgGCGGggGAg- -3' miRNA: 3'- -CGuuCCCGCUUa---CGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 156190 | 0.72 | 0.998483 |
Target: 5'- cGCAGGGGUGGuggauGUGCGGggGc-- -3' miRNA: 3'- -CGUUCCCGCU-----UACGUCuuUuau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 36631 | 0.72 | 0.998134 |
Target: 5'- gGCGGGGGUG-GUGguGAAGGUGg -3' miRNA: 3'- -CGUUCCCGCuUACguCUUUUAU- -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 64699 | 0.71 | 0.999516 |
Target: 5'- aGCcGGGGUGggUGUAGggGu-- -3' miRNA: 3'- -CGuUCCCGCuuACGUCuuUuau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 61601 | 0.71 | 0.999382 |
Target: 5'- uGUggGGGCGGcgGCGGAc---- -3' miRNA: 3'- -CGuuCCCGCUuaCGUCUuuuau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 152628 | 0.71 | 0.999382 |
Target: 5'- uGCAAGGaGCGAuuUGgAGAAAAUAa -3' miRNA: 3'- -CGUUCC-CGCUu-ACgUCUUUUAU- -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 108039 | 0.71 | 0.999516 |
Target: 5'- aUAGGGGCGAagGguGggGGUGg -3' miRNA: 3'- cGUUCCCGCUuaCguCuuUUAU- -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 50559 | 0.71 | 0.999018 |
Target: 5'- --cAGGGCGggUGCcuGGggGAUGg -3' miRNA: 3'- cguUCCCGCuuACG--UCuuUUAU- -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 54679 | 0.71 | 0.999382 |
Target: 5'- -gGAGGGCGAGgaGCGGAGGAa- -3' miRNA: 3'- cgUUCCCGCUUa-CGUCUUUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 100937 | 0.7 | 0.999778 |
Target: 5'- gGCAGGGGCGugccgcGCGGGGAAc- -3' miRNA: 3'- -CGUUCCCGCuua---CGUCUUUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 167261 | 0.7 | 0.999624 |
Target: 5'- cGCAGGGGCGuuggugGCGGAGu--- -3' miRNA: 3'- -CGUUCCCGCuua---CGUCUUuuau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 171314 | 0.69 | 0.999874 |
Target: 5'- gGUggGGGCGGGaGCGGggGGc- -3' miRNA: 3'- -CGuuCCCGCUUaCGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 85754 | 0.69 | 0.999924 |
Target: 5'- cCAGGGGCaacagcagacucugGAGUGCGGAGGAa- -3' miRNA: 3'- cGUUCCCG--------------CUUACGUCUUUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 170776 | 0.69 | 0.999874 |
Target: 5'- gGUggGGGCGGGaGCGGggGGc- -3' miRNA: 3'- -CGuuCCCGCUUaCGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | + | 169716 | 0.69 | 0.999874 |
Target: 5'- gGUggGGGCGGGaGCGGggGGc- -3' miRNA: 3'- -CGuuCCCGCUUaCGUCuuUUau -5' |
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MIMAT0001000 | ebv-miR-BART2 | -42.5 | NC_007605.1 | - | 36554 | 0.69 | 0.999874 |
Target: 5'- uGguGGGGgGggUGguGGGAGUGg -3' miRNA: 3'- -CguUCCCgCuuACguCUUUUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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