miRNA display CGI


Results 21 - 40 of 45 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 171314 0.69 0.999874
Target:  5'- gGUggGGGCGGGaGCGGggGGc- -3'
miRNA:   3'- -CGuuCCCGCUUaCGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 171286 0.66 1
Target:  5'- -aGGGGGCaGggUcGCAGggGGUGu -3'
miRNA:   3'- cgUUCCCG-CuuA-CGUCuuUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 170776 0.69 0.999874
Target:  5'- gGUggGGGCGGGaGCGGggGGc- -3'
miRNA:   3'- -CGuuCCCGCUUaCGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 170748 0.66 1
Target:  5'- -aGGGGGCaGggUcGCAGggGGUGu -3'
miRNA:   3'- cgUUCCCG-CuuA-CGUCuuUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 170254 0.69 0.999874
Target:  5'- gGUggGGGCGGGaGCGGggGGc- -3'
miRNA:   3'- -CGuuCCCGCUUaCGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 170226 0.66 1
Target:  5'- -aGGGGGCaGggUcGCAGggGGUGu -3'
miRNA:   3'- cgUUCCCG-CuuA-CGUCuuUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 169716 0.69 0.999874
Target:  5'- gGUggGGGCGGGaGCGGggGGc- -3'
miRNA:   3'- -CGuuCCCGCUUaCGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 169688 0.66 1
Target:  5'- -aGGGGGCaGggUcGCAGggGGUGu -3'
miRNA:   3'- cgUUCCCG-CuuA-CGUCuuUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 167261 0.7 0.999624
Target:  5'- cGCAGGGGCGuuggugGCGGAGu--- -3'
miRNA:   3'- -CGUUCCCGCuua---CGUCUUuuau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 160492 0.68 0.999987
Target:  5'- cCAGGGGCGAGcagcgcgGCAGAGGc-- -3'
miRNA:   3'- cGUUCCCGCUUa------CGUCUUUuau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 152628 0.71 0.999382
Target:  5'- uGCAAGGaGCGAuuUGgAGAAAAUAa -3'
miRNA:   3'- -CGUUCC-CGCUu-ACgUCUUUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 108039 0.71 0.999516
Target:  5'- aUAGGGGCGAagGguGggGGUGg -3'
miRNA:   3'- cGUUCCCGCUuaCguCuuUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 105357 0.67 0.999996
Target:  5'- aCGGGGGCGccccugGCAGAGAGg- -3'
miRNA:   3'- cGUUCCCGCuua---CGUCUUUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 98532 0.67 0.999998
Target:  5'- uGUggGGuGCGAagGCGGGAGAc- -3'
miRNA:   3'- -CGuuCC-CGCUuaCGUCUUUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 96519 0.68 0.999987
Target:  5'- aGCAggaGGGGCaGGA-GCAGGAGGUGg -3'
miRNA:   3'- -CGU---UCCCG-CUUaCGUCUUUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 86210 0.66 0.999999
Target:  5'- cGCAucaGGCGAagGCGGAGAAg- -3'
miRNA:   3'- -CGUuc-CCGCUuaCGUCUUUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 85754 0.69 0.999924
Target:  5'- cCAGGGGCaacagcagacucugGAGUGCGGAGGAa- -3'
miRNA:   3'- cGUUCCCG--------------CUUACGUCUUUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 72288 0.74 0.99216
Target:  5'- aGCGAGGGCcaGAUGCAGGAGc-- -3'
miRNA:   3'- -CGUUCCCGc-UUACGUCUUUuau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 64699 0.71 0.999516
Target:  5'- aGCcGGGGUGggUGUAGggGu-- -3'
miRNA:   3'- -CGuUCCCGCuuACGUCuuUuau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 + 61445 0.74 0.990849
Target:  5'- gGCGGGGGCGGcgGCGGGc---- -3'
miRNA:   3'- -CGUUCCCGCUuaCGUCUuuuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.