miRNA display CGI


Results 1 - 20 of 45 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 156190 0.72 0.998483
Target:  5'- cGCAGGGGUGGuggauGUGCGGggGc-- -3'
miRNA:   3'- -CGUUCCCGCU-----UACGUCuuUuau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 152788 1.02 0.094377
Target:  5'- cGCAAGGGCGAAUGCAGAAAAUAg -3'
miRNA:   3'- -CGUUCCCGCUUACGUCUUUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 148971 0.74 0.99216
Target:  5'- cGCAGGGGCgccgaaagcagGAAUGCGGGGAGc- -3'
miRNA:   3'- -CGUUCCCG-----------CUUACGUCUUUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 137185 0.68 0.999991
Target:  5'- gGUggGGGCGGAUGaGGGAcGUAu -3'
miRNA:   3'- -CGuuCCCGCUUACgUCUUuUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 127894 0.66 1
Target:  5'- gGCGGGGuGCucuGAUGCGGAAAAg- -3'
miRNA:   3'- -CGUUCC-CGc--UUACGUCUUUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 108443 0.67 0.999996
Target:  5'- -uGGGGuGCGggUGCGGguGAUGg -3'
miRNA:   3'- cgUUCC-CGCuuACGUCuuUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 100937 0.7 0.999778
Target:  5'- gGCAGGGGCGugccgcGCGGGGAAc- -3'
miRNA:   3'- -CGUUCCCGCuua---CGUCUUUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 62319 0.72 0.99772
Target:  5'- aGUggGGGCGGGgccgGCGGggGAg- -3'
miRNA:   3'- -CGuuCCCGCUUa---CGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 61601 0.71 0.999382
Target:  5'- uGUggGGGCGGcgGCGGAc---- -3'
miRNA:   3'- -CGuuCCCGCUuaCGUCUuuuau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 54679 0.71 0.999382
Target:  5'- -gGAGGGCGAGgaGCGGAGGAa- -3'
miRNA:   3'- cgUUCCCGCUUa-CGUCUUUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 36631 0.72 0.998134
Target:  5'- gGCGGGGGUG-GUGguGAAGGUGg -3'
miRNA:   3'- -CGUUCCCGCuUACguCUUUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 36554 0.69 0.999874
Target:  5'- uGguGGGGgGggUGguGGGAGUGg -3'
miRNA:   3'- -CguUCCCgCuuACguCUUUUAU- -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 35124 0.67 0.999996
Target:  5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3'
miRNA:   3'- -CGUU-----CCCGCUuACGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 32056 0.67 0.999996
Target:  5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3'
miRNA:   3'- -CGUU-----CCCGCUuACGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 28987 0.67 0.999996
Target:  5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3'
miRNA:   3'- -CGUU-----CCCGCUuACGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 25918 0.67 0.999996
Target:  5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3'
miRNA:   3'- -CGUU-----CCCGCUuACGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 22849 0.67 0.999996
Target:  5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3'
miRNA:   3'- -CGUU-----CCCGCUuACGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 19780 0.67 0.999996
Target:  5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3'
miRNA:   3'- -CGUU-----CCCGCUuACGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 16711 0.67 0.999996
Target:  5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3'
miRNA:   3'- -CGUU-----CCCGCUuACGUCuuUUau -5'
MIMAT0001000 ebv-miR-BART2 -42.5 NC_007605.1 - 13642 0.67 0.999996
Target:  5'- gGCAGagacuGGGCGGcUGCAGggGGg- -3'
miRNA:   3'- -CGUU-----CCCGCUuACGUCuuUUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.