Results 21 - 40 of 46 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 27598 | 0.7 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 27637 | 0.69 | 0.759422 |
Target: 5'- -cGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uuUCUCCCCCucUCCC-CCAGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 27677 | 0.7 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 27717 | 0.7 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 27757 | 0.7 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 27797 | 0.7 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 27837 | 0.7 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 27877 | 0.7 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 27917 | 0.7 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 27957 | 0.7 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 28090 | 0.7 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 28223 | 0.7 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 28264 | 0.7 | 0.706165 |
Target: 5'- cGGGAGGGGGccGGGGaGGUCg- -3' miRNA: 3'- uUUCUCCCCCucUCCC-CCAGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 69341 | 0.72 | 0.584423 |
Target: 5'- gAGGGuGGGGGAGugggugauuGGGGGUCa- -3' miRNA: 3'- -UUUCuCCCCCUCu--------CCCCCAGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 70328 | 0.66 | 0.896692 |
Target: 5'- uGGGAGGGgugaguucgacgguaGGGGAGGcGGGaUCUGu -3' miRNA: 3'- uUUCUCCC---------------CCUCUCC-CCC-AGAC- -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 70537 | 0.73 | 0.547184 |
Target: 5'- uGAAGGuucagcuGGGGGAGuugguugaggagcuGGGGGGUCUGu -3' miRNA: 3'- -UUUCU-------CCCCCUC--------------UCCCCCAGAC- -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | + | 72594 | 0.68 | 0.837124 |
Target: 5'- uAGGGAGGGGc---GGGGGUUUGg -3' miRNA: 3'- -UUUCUCCCCcucuCCCCCAGAC- -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 102115 | 0.7 | 0.684261 |
Target: 5'- uGGGGAGGGGGAGGacGGGGaUCg- -3' miRNA: 3'- -UUUCUCCCCCUCU--CCCCcAGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | + | 118130 | 0.73 | 0.55153 |
Target: 5'- aGAAGAGGGGG-GGGGGGcUCa- -3' miRNA: 3'- -UUUCUCCCCCuCUCCCCcAGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 118233 | 0.76 | 0.354621 |
Target: 5'- uGAGAGccaggcgaGGGGAGAGGGGG-CUGa -3' miRNA: 3'- uUUCUC--------CCCCUCUCCCCCaGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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