Results 41 - 46 of 46 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | + | 118252 | 0.73 | 0.508615 |
Target: 5'- -uGGAGGGGGcuGGAGGGGGg--- -3' miRNA: 3'- uuUCUCCCCC--UCUCCCCCagac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 118437 | 0.75 | 0.447111 |
Target: 5'- gGAAGGGaGGGGGGAGGGGaGgcaCUGg -3' miRNA: 3'- -UUUCUC-CCCCUCUCCCC-Ca--GAC- -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | + | 118531 | 0.66 | 0.893832 |
Target: 5'- cGGAGGGGcGGGGGuccggggggcGGGGGuGUCUa -3' miRNA: 3'- -UUUCUCC-CCCUC----------UCCCC-CAGAc -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 118582 | 0.66 | 0.893832 |
Target: 5'- uGGGGucGGGGGAGuGGGGG-Cg- -3' miRNA: 3'- -UUUCu-CCCCCUCuCCCCCaGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | + | 118821 | 0.67 | 0.854553 |
Target: 5'- cGGGGAGGGGGGccgggcGGGGGGagUGc -3' miRNA: 3'- -UUUCUCCCCCUc-----UCCCCCagAC- -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | - | 119445 | 0.7 | 0.695244 |
Target: 5'- uGAGAGccaggcgaGGGGAGAGGGGGa--- -3' miRNA: 3'- uUUCUC--------CCCCUCUCCCCCagac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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