Results 41 - 46 of 46 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | + | 118531 | 0.66 | 0.893832 |
Target: 5'- cGGAGGGGcGGGGGuccggggggcGGGGGuGUCUa -3' miRNA: 3'- -UUUCUCC-CCCUC----------UCCCC-CAGAc -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | + | 118252 | 0.73 | 0.508615 |
Target: 5'- -uGGAGGGGGcuGGAGGGGGg--- -3' miRNA: 3'- uuUCUCCCCC--UCUCCCCCagac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | + | 118130 | 0.73 | 0.55153 |
Target: 5'- aGAAGAGGGGG-GGGGGGcUCa- -3' miRNA: 3'- -UUUCUCCCCCuCUCCCCcAGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | + | 72594 | 0.68 | 0.837124 |
Target: 5'- uAGGGAGGGGc---GGGGGUUUGg -3' miRNA: 3'- -UUUCUCCCCcucuCCCCCAGAC- -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | + | 5956 | 0.72 | 0.59548 |
Target: 5'- aGGGGAGGGGGAGAu-GGGUCa- -3' miRNA: 3'- -UUUCUCCCCCUCUccCCCAGac -5' |
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MIMAT0001565 | mghv-miR-M1-2 | -52.6 | NC_001826.1 | + | 561 | 0.73 | 0.56244 |
Target: 5'- uGAGAGGGGGAGuGuGuGGUCUGu -3' miRNA: 3'- uUUCUCCCCCUCuCcC-CCAGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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