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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0001570 | mghv-miR-M1-7-5p | -48 | NC_001826.1 | - | 76901 | 0.67 | 0.985661 |
Target: 5'- aAGGcaUACCGCAUCUgccaCACCUUUg -3' miRNA: 3'- -UCCa-AUGGCGUGGAg---GUGGAAA- -5' |
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MIMAT0001570 | mghv-miR-M1-7-5p | -48 | NC_001826.1 | + | 63078 | 0.66 | 0.989106 |
Target: 5'- uGGGUUAUUGgauuaUGCCUCCACCg-- -3' miRNA: 3'- -UCCAAUGGC-----GUGGAGGUGGaaa -5' |
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MIMAT0001570 | mghv-miR-M1-7-5p | -48 | NC_001826.1 | - | 38695 | 0.66 | 0.993024 |
Target: 5'- uGGUUuaagGCCGcCACCgCCACCg-- -3' miRNA: 3'- uCCAA----UGGC-GUGGaGGUGGaaa -5' |
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MIMAT0001570 | mghv-miR-M1-7-5p | -48 | NC_001826.1 | + | 32502 | 0.66 | 0.990566 |
Target: 5'- uGGUUGCUaC-CCUCUACCUUUu -3' miRNA: 3'- uCCAAUGGcGuGGAGGUGGAAA- -5' |
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MIMAT0001570 | mghv-miR-M1-7-5p | -48 | NC_001826.1 | - | 28628 | 0.79 | 0.476337 |
Target: 5'- cGGccGCCGCGCCUCCACCc-- -3' miRNA: 3'- uCCaaUGGCGUGGAGGUGGaaa -5' |
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MIMAT0001570 | mghv-miR-M1-7-5p | -48 | NC_001826.1 | + | 25879 | 0.66 | 0.989106 |
Target: 5'- cAGaGUUGCCGCACCgaaACCa-- -3' miRNA: 3'- -UC-CAAUGGCGUGGaggUGGaaa -5' |
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MIMAT0001570 | mghv-miR-M1-7-5p | -48 | NC_001826.1 | - | 10181 | 0.67 | 0.97901 |
Target: 5'- cAGGUUACUGU-CUUCCGCCc-- -3' miRNA: 3'- -UCCAAUGGCGuGGAGGUGGaaa -5' |
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MIMAT0001570 | mghv-miR-M1-7-5p | -48 | NC_001826.1 | + | 4820 | 0.68 | 0.963231 |
Target: 5'- uAGGUccaguuuuUACUGCACCugcagcUCCACCUa- -3' miRNA: 3'- -UCCA--------AUGGCGUGG------AGGUGGAaa -5' |
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MIMAT0001570 | mghv-miR-M1-7-5p | -48 | NC_001826.1 | - | 1799 | 1.02 | 0.021651 |
Target: 5'- gAGGUUACCGCACCUCCACCUUUa -3' miRNA: 3'- -UCCAAUGGCGUGGAGGUGGAAA- -5' |
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MIMAT0001570 | mghv-miR-M1-7-5p | -48 | NC_001826.1 | - | 642 | 0.68 | 0.966903 |
Target: 5'- cAGGa-ACCGCugCUCUACCg-- -3' miRNA: 3'- -UCCaaUGGCGugGAGGUGGaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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