miRNA display CGI


Results 1 - 20 of 60 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 231970 0.72 0.954525
Target:  5'- ---cGggGggGGGGGGGGCGu -3'
miRNA:   3'- gccaCuuCuuCCCCUCCUGCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 231445 0.7 0.987978
Target:  5'- -cGUGuGGggGGGGGGGGCa- -3'
miRNA:   3'- gcCACuUCuuCCCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 227412 0.72 0.965951
Target:  5'- cCGGUGGggccGGGAcGGGGuGGGACGAg -3'
miRNA:   3'- -GCCACU----UCUU-CCCC-UCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 218360 0.69 0.993136
Target:  5'- gCGGacgaUGAGGAgcAGGGaGAGGAUGAu -3'
miRNA:   3'- -GCC----ACUUCU--UCCC-CUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 213943 0.67 0.99852
Target:  5'- aCGGUGGcgguaagcuGGAAGGcgacGAGGACGGa -3'
miRNA:   3'- -GCCACU---------UCUUCCc---CUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 194546 0.71 0.980232
Target:  5'- uGGUGAGGAcGGGGAcagGGGCa- -3'
miRNA:   3'- gCCACUUCUuCCCCU---CCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 194082 0.69 0.992053
Target:  5'- uGcGUGuAGAAGcGGGGGGAUGAa -3'
miRNA:   3'- gC-CACuUCUUC-CCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 193650 1.01 0.050549
Target:  5'- gCGGUGAAGAAGGGGAGGACGAc -3'
miRNA:   3'- -GCCACUUCUUCCCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 193348 0.68 0.997415
Target:  5'- aGGUGAGGuuGGGGcGGAUa- -3'
miRNA:   3'- gCCACUUCuuCCCCuCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 190048 0.66 0.999481
Target:  5'- uGGUG-GGAcuccuccgacGGcGGGGGGACGAa -3'
miRNA:   3'- gCCACuUCU----------UC-CCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 185121 0.71 0.97234
Target:  5'- gCGGUGgcGAAGGGGA--ACGAa -3'
miRNA:   3'- -GCCACuuCUUCCCCUccUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 184545 0.7 0.98447
Target:  5'- uGGUGccccacgccGGGAAGGGGAcGACGAg -3'
miRNA:   3'- gCCAC---------UUCUUCCCCUcCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 176234 0.66 0.999481
Target:  5'- aCGGaGggGAAGGGGGGuACa- -3'
miRNA:   3'- -GCCaCuuCUUCCCCUCcUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 172557 0.71 0.980232
Target:  5'- gGGUGcucagGAGGAGcGGGAGGACa- -3'
miRNA:   3'- gCCAC-----UUCUUC-CCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 167701 0.69 0.994947
Target:  5'- gCGGcgcGAGGGAGGaGGAGGugGu -3'
miRNA:   3'- -GCCa--CUUCUUCC-CCUCCugCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 166312 0.67 0.999196
Target:  5'- uGGaUGAAGAAGaGccagaacuGGAGGACGAc -3'
miRNA:   3'- gCC-ACUUCUUC-C--------CCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 164970 0.71 0.975188
Target:  5'- aCGGUGgcGgcGGuGGAGGGCGc -3'
miRNA:   3'- -GCCACuuCuuCC-CCUCCUGCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 150491 0.67 0.99852
Target:  5'- gCGGUGGcagcuuGggGGGuGAGGGCa- -3'
miRNA:   3'- -GCCACUu-----CuuCCC-CUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 150322 0.7 0.98447
Target:  5'- uGGUGGuGGAAgcGGuGGAGGACGAc -3'
miRNA:   3'- gCCACU-UCUU--CC-CCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 145687 0.75 0.869368
Target:  5'- uCGGac--GAAGGGGAGGACGAu -3'
miRNA:   3'- -GCCacuuCUUCCCCUCCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.