miRNA display CGI


Results 1 - 20 of 60 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 1162 0.71 0.980232
Target:  5'- uGGUGAGGAcGGGGAcagGGGCa- -3'
miRNA:   3'- gCCACUUCUuCCCCU---CCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 20361 0.7 0.982447
Target:  5'- uGGUGGAuccGGAGGGGGGaACGAg -3'
miRNA:   3'- gCCACUU---CUUCCCCUCcUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 20721 0.72 0.965951
Target:  5'- -cGUGAAGAAGuGGAGGACGu -3'
miRNA:   3'- gcCACUUCUUCcCCUCCUGCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 30459 0.7 0.98447
Target:  5'- gCGGaUGAGGAGGcGGAGGACa- -3'
miRNA:   3'- -GCC-ACUUCUUCcCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 32501 0.69 0.992053
Target:  5'- gCGGUGGcAGcGGGGGuGGugGGg -3'
miRNA:   3'- -GCCACU-UCuUCCCCuCCugCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 37638 0.66 0.999587
Target:  5'- gCGuGUGGAGGAcGGGGuGGAgCGGg -3'
miRNA:   3'- -GC-CACUUCUU-CCCCuCCU-GCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 38518 0.72 0.954525
Target:  5'- aGGacGAAGGAGGGGAgacgaGGACGAc -3'
miRNA:   3'- gCCa-CUUCUUCCCCU-----CCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 43396 0.7 0.987495
Target:  5'- aCGGUGAgcgccccaccuagaGGGAGGGGGGGuaguuuaauaGCGGa -3'
miRNA:   3'- -GCCACU--------------UCUUCCCCUCC----------UGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 45931 0.68 0.997842
Target:  5'- ---cGAGGGAGaGGAGGACGAc -3'
miRNA:   3'- gccaCUUCUUCcCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 51447 0.66 0.999352
Target:  5'- aCGG-GA--AAGGGGAGGGCa- -3'
miRNA:   3'- -GCCaCUucUUCCCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 51565 0.72 0.969264
Target:  5'- gGGUGguGgcGGcGGAGGACGGa -3'
miRNA:   3'- gCCACuuCuuCC-CCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 51730 0.73 0.94418
Target:  5'- uGGUGAAGGauGugauguacacggccGGGGAGGGCGAc -3'
miRNA:   3'- gCCACUUCU--U--------------CCCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 52958 0.73 0.935618
Target:  5'- aCGGagGAGGAAaGGGAGGAUGAa -3'
miRNA:   3'- -GCCa-CUUCUUcCCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 60433 0.68 0.99692
Target:  5'- aGGaUGGAGcuggacagugucGAGGaGGAGGACGAu -3'
miRNA:   3'- gCC-ACUUC------------UUCC-CCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 70211 0.66 0.999526
Target:  5'- gGGUGAuacAGAAagccuugaccuguucGGGGAGGugGu -3'
miRNA:   3'- gCCACU---UCUU---------------CCCCUCCugCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 71612 0.73 0.94561
Target:  5'- gCGGUGuuagacauGGGgcaggccgugGGGGGAGGACGAg -3'
miRNA:   3'- -GCCACu-------UCU----------UCCCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 73806 0.67 0.998208
Target:  5'- uCGGaUGAcgAGGAGGaGGAGGAgGGg -3'
miRNA:   3'- -GCC-ACU--UCUUCC-CCUCCUgCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 75067 0.7 0.989485
Target:  5'- gCGGUGGGcucGAGGGGGgAGGugGu -3'
miRNA:   3'- -GCCACUU---CUUCCCC-UCCugCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 76224 0.67 0.999196
Target:  5'- aGGaUGAAGAAGGaGGAGaaaaaggaggaGACGAu -3'
miRNA:   3'- gCC-ACUUCUUCC-CCUC-----------CUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 84786 0.67 0.99852
Target:  5'- gCGGUcgaGGAGGAGGGGuacGGACu- -3'
miRNA:   3'- -GCCA---CUUCUUCCCCu--CCUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.