miRNA display CGI


Results 21 - 40 of 60 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 86068 0.66 0.999526
Target:  5'- cCGGgcccgugGAGGAggcaagaaagcuguaGGGGGAgGGGCGAa -3'
miRNA:   3'- -GCCa------CUUCU---------------UCCCCU-CCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 87737 0.73 0.935618
Target:  5'- cCGGgccgccUGAGGAAGGGGAGGAg-- -3'
miRNA:   3'- -GCC------ACUUCUUCCCCUCCUgcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 90078 0.67 0.998208
Target:  5'- gCGGUGcuGGcGGGGGuGGugGAc -3'
miRNA:   3'- -GCCACu-UCuUCCCCuCCugCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 93354 0.67 0.998785
Target:  5'- gGGUGGAGucuaGGGAGGGCu- -3'
miRNA:   3'- gCCACUUCuuc-CCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 93940 0.74 0.918576
Target:  5'- gGGUGAGGggGGGGGuuacGGugGu -3'
miRNA:   3'- gCCACUUCuuCCCCU----CCugCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 94558 0.71 0.980232
Target:  5'- cCGGgGAGGGugGGGGGuAGGGCGGg -3'
miRNA:   3'- -GCCaCUUCU--UCCCC-UCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 94701 0.69 0.992053
Target:  5'- uCGGaUGggGGgucgagcgGGGGGAGGGCa- -3'
miRNA:   3'- -GCC-ACuuCU--------UCCCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 94804 0.67 0.999009
Target:  5'- cCGGgGAGGAgcgGGGuGGGGGugGGa -3'
miRNA:   3'- -GCCaCUUCU---UCC-CCUCCugCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 94854 0.69 0.994097
Target:  5'- aCGGUGGu---GGGGAcGGGCGAc -3'
miRNA:   3'- -GCCACUucuuCCCCU-CCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 94911 0.66 0.999481
Target:  5'- uGG-GggGAGGGGaAGGGCGc -3'
miRNA:   3'- gCCaCuuCUUCCCcUCCUGCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 95363 0.68 0.997415
Target:  5'- -aGUGggGGAGGGGAGcGucACGGg -3'
miRNA:   3'- gcCACuuCUUCCCCUC-C--UGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 99159 0.68 0.99692
Target:  5'- aCGGUGggGAaaAGGaGGGGGcCGu -3'
miRNA:   3'- -GCCACuuCU--UCC-CCUCCuGCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 99835 0.67 0.998785
Target:  5'- aCGGUGGcuGGGcGGGAGGAgCGGc -3'
miRNA:   3'- -GCCACUucUUC-CCCUCCU-GCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 101323 0.75 0.877176
Target:  5'- gCGGgagGAggguGGAAGGGGAGGAgGAu -3'
miRNA:   3'- -GCCa--CU----UCUUCCCCUCCUgCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 105332 0.67 0.999009
Target:  5'- gCGGcugcugGAAGAGGGcgacgaGGAGGAUGAa -3'
miRNA:   3'- -GCCa-----CUUCUUCC------CCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 105921 0.68 0.997842
Target:  5'- gGGUGAAaccGAugucGGGGGuGGGCGGc -3'
miRNA:   3'- gCCACUU---CU----UCCCCuCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 115540 0.68 0.996349
Target:  5'- gGGUGAgaaagaggaGGAuGGGGGGGACc- -3'
miRNA:   3'- gCCACU---------UCUuCCCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 119331 0.68 0.997415
Target:  5'- aGGagGAAGAAGaGGaaGAGGACGAc -3'
miRNA:   3'- gCCa-CUUCUUC-CC--CUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 130573 0.7 0.98447
Target:  5'- -aGUGggGGAGGGGGaaacGGugGAa -3'
miRNA:   3'- gcCACuuCUUCCCCU----CCugCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 135512 0.67 0.998785
Target:  5'- aGGgaacaGGAGAAGGGcaGGGACGAc -3'
miRNA:   3'- gCCa----CUUCUUCCCc-UCCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.