Results 21 - 40 of 60 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 184545 | 0.7 | 0.98447 |
Target: 5'- uGGUGccccacgccGGGAAGGGGAcGACGAg -3' miRNA: 3'- gCCAC---------UUCUUCCCCUcCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 130573 | 0.7 | 0.98447 |
Target: 5'- -aGUGggGGAGGGGGaaacGGugGAa -3' miRNA: 3'- gcCACuuCUUCCCCU----CCugCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 150322 | 0.7 | 0.98447 |
Target: 5'- uGGUGGuGGAAgcGGuGGAGGACGAc -3' miRNA: 3'- gCCACU-UCUU--CC-CCUCCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 30459 | 0.7 | 0.98447 |
Target: 5'- gCGGaUGAGGAGGcGGAGGACa- -3' miRNA: 3'- -GCC-ACUUCUUCcCCUCCUGcu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 43396 | 0.7 | 0.987495 |
Target: 5'- aCGGUGAgcgccccaccuagaGGGAGGGGGGGuaguuuaauaGCGGa -3' miRNA: 3'- -GCCACU--------------UCUUCCCCUCC----------UGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 231445 | 0.7 | 0.987978 |
Target: 5'- -cGUGuGGggGGGGGGGGCa- -3' miRNA: 3'- gcCACuUCuuCCCCUCCUGcu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 75067 | 0.7 | 0.989485 |
Target: 5'- gCGGUGGGcucGAGGGGGgAGGugGu -3' miRNA: 3'- -GCCACUU---CUUCCCC-UCCugCu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 94701 | 0.69 | 0.992053 |
Target: 5'- uCGGaUGggGGgucgagcgGGGGGAGGGCa- -3' miRNA: 3'- -GCC-ACuuCU--------UCCCCUCCUGcu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 32501 | 0.69 | 0.992053 |
Target: 5'- gCGGUGGcAGcGGGGGuGGugGGg -3' miRNA: 3'- -GCCACU-UCuUCCCCuCCugCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 194082 | 0.69 | 0.992053 |
Target: 5'- uGcGUGuAGAAGcGGGGGGAUGAa -3' miRNA: 3'- gC-CACuUCUUC-CCCUCCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 218360 | 0.69 | 0.993136 |
Target: 5'- gCGGacgaUGAGGAgcAGGGaGAGGAUGAu -3' miRNA: 3'- -GCC----ACUUCU--UCCC-CUCCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 94854 | 0.69 | 0.994097 |
Target: 5'- aCGGUGGu---GGGGAcGGGCGAc -3' miRNA: 3'- -GCCACUucuuCCCCU-CCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 167701 | 0.69 | 0.994947 |
Target: 5'- gCGGcgcGAGGGAGGaGGAGGugGu -3' miRNA: 3'- -GCCa--CUUCUUCC-CCUCCugCu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 115540 | 0.68 | 0.996349 |
Target: 5'- gGGUGAgaaagaggaGGAuGGGGGGGACc- -3' miRNA: 3'- gCCACU---------UCUuCCCCUCCUGcu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 60433 | 0.68 | 0.99692 |
Target: 5'- aGGaUGGAGcuggacagugucGAGGaGGAGGACGAu -3' miRNA: 3'- gCC-ACUUC------------UUCC-CCUCCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 99159 | 0.68 | 0.99692 |
Target: 5'- aCGGUGggGAaaAGGaGGGGGcCGu -3' miRNA: 3'- -GCCACuuCU--UCC-CCUCCuGCu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 193348 | 0.68 | 0.997415 |
Target: 5'- aGGUGAGGuuGGGGcGGAUa- -3' miRNA: 3'- gCCACUUCuuCCCCuCCUGcu -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 119331 | 0.68 | 0.997415 |
Target: 5'- aGGagGAAGAAGaGGaaGAGGACGAc -3' miRNA: 3'- gCCa-CUUCUUC-CC--CUCCUGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | - | 95363 | 0.68 | 0.997415 |
Target: 5'- -aGUGggGGAGGGGAGcGucACGGg -3' miRNA: 3'- gcCACuuCUUCCCCUC-C--UGCU- -5' |
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MIMAT0001578 | hcmv-miR-UL148D | -47.9 | NC_006273.1 | + | 105921 | 0.68 | 0.997842 |
Target: 5'- gGGUGAAaccGAugucGGGGGuGGGCGGc -3' miRNA: 3'- gCCACUU---CU----UCCCCuCCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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