miRNA display CGI


Results 21 - 40 of 60 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 150491 0.67 0.99852
Target:  5'- gCGGUGGcagcuuGggGGGuGAGGGCa- -3'
miRNA:   3'- -GCCACUu-----CuuCCC-CUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 167701 0.69 0.994947
Target:  5'- gCGGcgcGAGGGAGGaGGAGGugGu -3'
miRNA:   3'- -GCCa--CUUCUUCC-CCUCCugCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 176234 0.66 0.999481
Target:  5'- aCGGaGggGAAGGGGGGuACa- -3'
miRNA:   3'- -GCCaCuuCUUCCCCUCcUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 185121 0.71 0.97234
Target:  5'- gCGGUGgcGAAGGGGA--ACGAa -3'
miRNA:   3'- -GCCACuuCUUCCCCUccUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 190048 0.66 0.999481
Target:  5'- uGGUG-GGAcuccuccgacGGcGGGGGGACGAa -3'
miRNA:   3'- gCCACuUCU----------UC-CCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 193348 0.68 0.997415
Target:  5'- aGGUGAGGuuGGGGcGGAUa- -3'
miRNA:   3'- gCCACUUCuuCCCCuCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 194082 0.69 0.992053
Target:  5'- uGcGUGuAGAAGcGGGGGGAUGAa -3'
miRNA:   3'- gC-CACuUCUUC-CCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 213943 0.67 0.99852
Target:  5'- aCGGUGGcgguaagcuGGAAGGcgacGAGGACGGa -3'
miRNA:   3'- -GCCACU---------UCUUCCc---CUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 231445 0.7 0.987978
Target:  5'- -cGUGuGGggGGGGGGGGCa- -3'
miRNA:   3'- gcCACuUCuuCCCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 + 231970 0.72 0.954525
Target:  5'- ---cGggGggGGGGGGGGCGu -3'
miRNA:   3'- gccaCuuCuuCCCCUCCUGCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 20361 0.7 0.982447
Target:  5'- uGGUGGAuccGGAGGGGGGaACGAg -3'
miRNA:   3'- gCCACUU---CUUCCCCUCcUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 32501 0.69 0.992053
Target:  5'- gCGGUGGcAGcGGGGGuGGugGGg -3'
miRNA:   3'- -GCCACU-UCuUCCCCuCCugCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 37638 0.66 0.999587
Target:  5'- gCGuGUGGAGGAcGGGGuGGAgCGGg -3'
miRNA:   3'- -GC-CACUUCUU-CCCCuCCU-GCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 51447 0.66 0.999352
Target:  5'- aCGG-GA--AAGGGGAGGGCa- -3'
miRNA:   3'- -GCCaCUucUUCCCCUCCUGcu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 51730 0.73 0.94418
Target:  5'- uGGUGAAGGauGugauguacacggccGGGGAGGGCGAc -3'
miRNA:   3'- gCCACUUCU--U--------------CCCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 52958 0.73 0.935618
Target:  5'- aCGGagGAGGAAaGGGAGGAUGAa -3'
miRNA:   3'- -GCCa-CUUCUUcCCCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 60433 0.68 0.99692
Target:  5'- aGGaUGGAGcuggacagugucGAGGaGGAGGACGAu -3'
miRNA:   3'- gCC-ACUUC------------UUCC-CCUCCUGCU- -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 70211 0.66 0.999526
Target:  5'- gGGUGAuacAGAAagccuugaccuguucGGGGAGGugGu -3'
miRNA:   3'- gCCACU---UCUU---------------CCCCUCCugCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 75067 0.7 0.989485
Target:  5'- gCGGUGGGcucGAGGGGGgAGGugGu -3'
miRNA:   3'- -GCCACUU---CUUCCCC-UCCugCu -5'
MIMAT0001578 hcmv-miR-UL148D -47.9 NC_006273.1 - 86068 0.66 0.999526
Target:  5'- cCGGgcccgugGAGGAggcaagaaagcuguaGGGGGAgGGGCGAa -3'
miRNA:   3'- -GCCa------CUUCU---------------UCCCCU-CCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.