miRNA display CGI


Results 1 - 20 of 26 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 - 70227 0.66 0.996363
Target:  5'- ---gCGGGCCAUUGGGUGGg- -3'
miRNA:   3'- ccagGCUCGGUGACUCGCCaa -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 + 231175 0.66 0.995714
Target:  5'- gGGUCCGAGCUGCgGuaugggucacGGCGGc- -3'
miRNA:   3'- -CCAGGCUCGGUGaC----------UCGCCaa -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 - 199128 0.66 0.995714
Target:  5'- cGGUCCGucgagaccggcGGaCCGCgGAGCGGa- -3'
miRNA:   3'- -CCAGGC-----------UC-GGUGaCUCGCCaa -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 - 154470 0.66 0.994973
Target:  5'- cGGUCCacguaGGCCACgugcuccuccuUGAGCGGg- -3'
miRNA:   3'- -CCAGGc----UCGGUG-----------ACUCGCCaa -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 - 35510 0.66 0.994973
Target:  5'- uGG-CCGAGaCGCUGcGCGGUUu -3'
miRNA:   3'- -CCaGGCUCgGUGACuCGCCAA- -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 - 233095 0.66 0.994132
Target:  5'- cGUCCGGGCCGCggcGAGgcugaGGUg -3'
miRNA:   3'- cCAGGCUCGGUGa--CUCg----CCAa -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 + 87984 0.66 0.99318
Target:  5'- --gCCGAcGCCACUGGGCGcGa- -3'
miRNA:   3'- ccaGGCU-CGGUGACUCGC-Caa -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 + 68404 0.66 0.99318
Target:  5'- uGGUCaCGcGCCACaaaaUGAGCGGc- -3'
miRNA:   3'- -CCAG-GCuCGGUG----ACUCGCCaa -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 + 145170 0.66 0.99318
Target:  5'- cGcCCGAGCUGCUGGGcCGGc- -3'
miRNA:   3'- cCaGGCUCGGUGACUC-GCCaa -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 + 15976 0.67 0.990909
Target:  5'- uGUCCGGGCCACaGGGaGGg- -3'
miRNA:   3'- cCAGGCUCGGUGaCUCgCCaa -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 + 116332 0.67 0.990523
Target:  5'- cGUCgCGGGCCAUcaucguucgcucggUGAGCGGg- -3'
miRNA:   3'- cCAG-GCUCGGUG--------------ACUCGCCaa -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 + 149396 0.67 0.988081
Target:  5'- uGGUCUgGGGCgAC-GAGCGGUUg -3'
miRNA:   3'- -CCAGG-CUCGgUGaCUCGCCAA- -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 + 100191 0.68 0.984616
Target:  5'- aGGUCCGAgacagcGCCGC--AGCGGUa -3'
miRNA:   3'- -CCAGGCU------CGGUGacUCGCCAa -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 - 64249 0.68 0.984616
Target:  5'- -aUCUGGGCCACcGuGCGGUg -3'
miRNA:   3'- ccAGGCUCGGUGaCuCGCCAa -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 - 214139 0.68 0.982619
Target:  5'- cGGUggCCGAGCUAUgcGAGCGGg- -3'
miRNA:   3'- -CCA--GGCUCGGUGa-CUCGCCaa -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 - 197912 0.68 0.978047
Target:  5'- --cCUGAG-CACUGAGCGGUg -3'
miRNA:   3'- ccaGGCUCgGUGACUCGCCAa -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 - 75442 0.69 0.972644
Target:  5'- aGUCCGAguGCCACUGGGUGu-- -3'
miRNA:   3'- cCAGGCU--CGGUGACUCGCcaa -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 - 137452 0.69 0.96634
Target:  5'- uGGcgaCGAGCuCGCUGAGCGGc- -3'
miRNA:   3'- -CCag-GCUCG-GUGACUCGCCaa -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 + 221807 0.69 0.962831
Target:  5'- cGGcCCGGGCCGCccGGCGGg- -3'
miRNA:   3'- -CCaGGCUCGGUGacUCGCCaa -5'
MIMAT0001581 hcmv-miR-US25-1 -50 NC_006273.1 - 144475 0.69 0.962831
Target:  5'- cGUCCGAGCCGCcGuGcCGGUc -3'
miRNA:   3'- cCAGGCUCGGUGaCuC-GCCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.