Results 21 - 26 of 26 are showing below:
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Acc. No. | Name | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
MIMAT0001581 | hcmv-miR-US25-1 | -50 | NC_006273.1 | - | 145172 | 0.74 | 0.791512 |
Target: 5'- cGGUUCGGGCgGCuUGAGCGGg- -3' miRNA: 3'- -CCAGGCUCGgUG-ACUCGCCaa -5' |
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MIMAT0001581 | hcmv-miR-US25-1 | -50 | NC_006273.1 | - | 154470 | 0.66 | 0.994973 |
Target: 5'- cGGUCCacguaGGCCACgugcuccuccuUGAGCGGg- -3' miRNA: 3'- -CCAGGc----UCGGUG-----------ACUCGCCaa -5' |
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MIMAT0001581 | hcmv-miR-US25-1 | -50 | NC_006273.1 | - | 197912 | 0.68 | 0.978047 |
Target: 5'- --cCUGAG-CACUGAGCGGUg -3' miRNA: 3'- ccaGGCUCgGUGACUCGCCAa -5' |
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MIMAT0001581 | hcmv-miR-US25-1 | -50 | NC_006273.1 | - | 199128 | 0.66 | 0.995714 |
Target: 5'- cGGUCCGucgagaccggcGGaCCGCgGAGCGGa- -3' miRNA: 3'- -CCAGGC-----------UC-GGUGaCUCGCCaa -5' |
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MIMAT0001581 | hcmv-miR-US25-1 | -50 | NC_006273.1 | - | 214139 | 0.68 | 0.982619 |
Target: 5'- cGGUggCCGAGCUAUgcGAGCGGg- -3' miRNA: 3'- -CCA--GGCUCGGUGa-CUCGCCaa -5' |
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MIMAT0001581 | hcmv-miR-US25-1 | -50 | NC_006273.1 | - | 233095 | 0.66 | 0.994132 |
Target: 5'- cGUCCGGGCCGCggcGAGgcugaGGUg -3' miRNA: 3'- cCAGGCUCGGUGa--CUCg----CCAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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